RNA id: XM_021591571.2


Basic Information

Item Value
RNA id XM_021591571.2
length 2548
RNA type mRNA
GC content 0.47
exon number 11
gene id LOC110510195
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 37059194 ~ 37072763 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACtatagccacaaagtcaaaattggctatcgTAAAAATTCAggcaaacaaaaatgtgcttttcggGCTTAGTTTAAAGTTAGGGTTAAgcacaaggttagcagtgtggttaaggttaggtttaagatcagattttttaaataaatatacattttagaaataggcGTGGTttgtgactttgtggctgtggtaactagtgattaCCGGGAAGACACTGACAGAGGATTTCTAAAATGGCGACGTCTTTAGGAGCTAACACCTACAATAGACAAAATTGGGAAGACGCGGATTTTCCCATTCTCTGCCAGACATGTCTTGGAGAGAATCCTTATATTCGAATGACCAAGGAGAAGTATGGCAAGGAGTGCAAGATATGTGCCAGACCATTCACTGTGTTCCGTTGGTGTCCTGGGACCCGCATGCGCTTCAAGAAGACAGAGGCGTGCCAGACGTGCAGCAAGATAAAGAATGTCTGTCAGACCTGCCTGCTGGATCTAGAGTATGGCTTGCCAATACAGGTCCGAGACACTGGTCTGTCAATCAAGGACGATGTGCCAAAATCAGATGTGAACAAGGAATACTACACACAGAACATGGAAAGAGAGATAGGGAACTCTGATGGTACCCGGCCCGTGGGTCTCCTGGGTAAGGCCCCCAGCTCTAGTGACATGCTGCTGAAGCTAGCCCGCACCACACCTTACTACAAGAGGAACAGACCACATATCTGCTCCTTCTGGGTGAAGGGAGAgtgtaagagaggagaggagtgtcctTACAGGCATGAGAAGCCAACTGATCCAGACGATCCCCTGGCAGACCAGAACATTAAGGACCGTTACTATGGTATCAACGACCCTGTGGCTGACAAGCTGCTGAAGAGAGCCTCCACCATGCCGAGACTGGACACTCCAGAGGACAAGTCCATCACTACACTGTACGTGGGGGGGCTCGGAGACTCCATCACAGACTCTGAACTCAGGAACCATTTCTACCAGTTTGGGGAGATCCGAACCACCACCATCGTTCAGAGGCAGCAGTGTGCCTTCATCCAGTTTGCCACCCGTCAGGCTGCAGAGTTAGCTGCTGAGAAATCCTTCAACAAGCTCATTATCAACGGTCGCAGACTCAACGTCAAATGGGGCAGGTcccagggagaggggggaaggagggacgggagaggggggaaggacgGAAGGGGAGAAGGGCTGACTGAGATGGGGCTGAAGCTGGAGCCGGTACCTGGACTGCCTGGAGcGCTACCTCCACCGCCTGTGGATGAAGACACCCCTACCAACTACTTCAACCTGGGCCCCAACTCAGCTCCTCCTGTCATGAACATCAGTCTACCCCCACCCCCCGGTGTGGCTATGCCCCCCCCTCCAGGCTTTGGGCCACCCATGTTCCACTCCATGGACCCTATGGGGATGCCCCCTCCCATGGGCATGAGGCCCCCTGGCCATGTCCACTACCCCTCCCAGGATCCACAGCGCATGGGTGCACACGCCAGCCGTCACGGAGGCTCCTAGACCCTCGTACCTCACTGTTTATGATTAACATCGTGATAATTTGACCAATTTTTGCCCTATTAATAACCGACACAGTGACTATAGTCACAGTTCACAGATGTGAGATGCTTCTTTTATATTTGTGTAATGGAGAAGAACCTCTGTTTTGTGCATCAGCAAGGTCTTGCTCGTTAGGAAACTGGAGTGCTGAACAGTATAGTTTTAAATGATTCGTTATACCTTCCTCCATTGAACCtacaagtaactgccaaaataaaggaaacaaagtgtcttaatagggtgttgggccaaaactgcttcaatgcgccttgggcATAGAactctacaagtgtctggaactctattggagggatgcgacacccattcttccacaataaataaattcatttggtgttttgttgatggtggtggaaaacgctgtctcagactCATCAGAATCTCccgtaagtgttcaattgggttgagaccGGGTGACTAAGAGACACACATTTTAAACCACCTATGCTCCTATGAGACcccttttttttccccccaaagtcactgatctcttctaaccatggtagccaaaataatgggcaactggtcattttattgcttaattaactcaggaaccacacgtGTGTGGAaacacctgctttcaatacactttgtatccctcattttctaaagtgtttcctttattttggcagttacctgtatgttctATCTCTGACTTGTATATttgaaagggggagggagggttaCGTTTGCAAGTTGTGCATATTGTACTGAACCTTTCTTATAGAGAATGTCTCCATTTCTACAATTCTTTTTCCTTATAATGCATTTTATGCAGAATTGTCCGACGTTAACGTTCTTCAGAACAACCAATTGTTAAGACCATTTTACTTCCATGTGGTGGCACTATTATCTAAAGATTGAAGGTGTCCATGACTCCACAGCATTGTCAACGTCTTTTATTATAACTGTGAAAAGTGTATGGTTAACATTTTTGCTTCATTAAACATATCCTTTCTTTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2492491 lncRNA downstream 8572 37049381 ~ 37050622 (-) True G2180600
TU2492490 lncRNA downstream 10212 37048291 ~ 37048982 (-) False G2180600
TU2492486 lncRNA downstream 11655 37047287 ~ 37047539 (-) True G2180598
TU2492482 lncRNA downstream 15824 37043166 ~ 37043370 (-) True G2180594
TU2492481 lncRNA downstream 16453 37042479 ~ 37042741 (-) True G2180593
TU2493042 lncRNA upstream 2398 37071281 ~ 37071521 (-) True G2181041
TU2493061 lncRNA upstream 28975 37097858 ~ 37111700 (-) True G2181060
TU2493163 lncRNA upstream 132114 37200997 ~ 37201776 (-) False G2181151
TU2493164 lncRNA upstream 132114 37200997 ~ 37201776 (-) True G2181151
TU2493174 lncRNA upstream 138689 37207572 ~ 37210952 (-) True G2181157
XR_005040451.1 mRNA downstream 81518 36975909 ~ 36977676 (-) False LOC110509384
XR_002471537.2 mRNA downstream 96936 36952839 ~ 36962258 (-) False LOC110510199
XM_036967967.1 mRNA downstream 109072 36935309 ~ 36950122 (-) False LOC110510200
XM_036967193.1 mRNA upstream 166422 37235305 ~ 37238024 (-) False LOC110510193
XM_036967197.1 mRNA upstream 166422 37235305 ~ 37238282 (-) False LOC110510193
XM_036967194.1 mRNA upstream 166422 37235305 ~ 37238283 (-) False LOC110510193
XM_036967191.1 mRNA upstream 166422 37235305 ~ 37238476 (-) False LOC110510193
XM_036967192.1 mRNA upstream 166422 37235305 ~ 37238476 (-) False LOC110510193
TU2492475 other downstream 76485 36981957 ~ 36982709 (-) True G2180587
TU2492418 other downstream 79433 36977154 ~ 36979761 (-) True LOC110509384
TU2491926 other downstream 462821 36534097 ~ 36596373 (-) True LOC110510209
TU2491922 other downstream 462888 36534097 ~ 36596306 (-) False LOC110510209
TU2491931 other downstream 547005 36504473 ~ 36512189 (-) False LOC110510209
TU2493150 other upstream 163986 37232869 ~ 37233899 (-) True G2181143
TU2493155 other upstream 165910 37234793 ~ 37239339 (-) False LOC110510193
TU2493152 other upstream 166063 37234946 ~ 37239793 (-) False LOC110510193
TU2493153 other upstream 166063 37234946 ~ 37239339 (-) True LOC110510193
TU2493346 other upstream 414765 37483648 ~ 37484650 (-) True nsrp1

Expression Profile