RNA id: XM_036967468.1


Basic Information

Item Value
RNA id XM_036967468.1
length 2427
RNA type mRNA
GC content 0.48
exon number 11
gene id LOC110510195
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 37059194 ~ 37072763 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAATTACGATAGAGAGAGGTGAAGgtagagtcatgcgtcctccaaaacatgacccgtcTAACCGCTCTTCTTAACacccaatgtgtcagaggaaacacctttcaactgatgaccgaagtcATCCTGCAGGCGCCCAGCCtgtcacaaggagtcgctagttCAGATGATTTTCCCATTCTCTGCCAGACATGTCTTGGAGAGAATCCTTATATTCGAATGACCAAGGAGAAGTATGGCAAGGAGTGCAAGATATGTGCCAGACCATTCACTGTGTTCCGTTGGTGTCCTGGGACCCGCATGCGCTTCAAGAAGACAGAGGCGTGCCAGACGTGCAGCAAGATAAAGAATGTCTGTCAGACCTGCCTGCTGGATCTAGAGTATGGCTTGCCAATACAGGTCCGAGACACTGGTCTGTCAATCAAGGACGATGTGCCAAAATCAGATGTGAACAAGGAATACTACACACAGAACATGGAAAGAGAGATAGGGAACTCTGATGGTACCCGGCCCGTGGGTCTCCTGGGTAAGGCCCCCAGCTCTAGTGACATGCTGCTGAAGCTAGCCCGCACCACACCTTACTACAAGAGGAACAGACCACATATCTGCTCCTTCTGGGTGAAGGGAGAgtgtaagagaggagaggagtgtcctTACAGGCATGAGAAGCCAACTGATCCAGACGATCCCCTGGCAGACCAGAACATTAAGGACCGTTACTATGGTATCAACGACCCTGTGGCTGACAAGCTGCTGAAGAGAGCCTCCACCATGCCGAGACTGGACACTCCAGAGGACAAGTCCATCACTACACTGTACGTGGGGGGGCTCGGAGACTCCATCACAGACTCTGAACTCAGGAACCATTTCTACCAGTTTGGGGAGATCCGAACCACCACCATCGTTCAGAGGCAGCAGTGTGCCTTCATCCAGTTTGCCACCCGTCAGGCTGCAGAGTTAGCTGCTGAGAAATCCTTCAACAAGCTCATTATCAACGGTCGCAGACTCAACGTCAAATGGGGCAGGTcccagggagaggggggaaggagggacgggagaggggggaaggacgGAAGGGGAGAAGGGCTGACTGAGATGGGGCTGAAGCTGGAGCCGGTACCTGGACTGCCTGGAGcGCTACCTCCACCGCCTGTGGATGAAGACACCCCTACCAACTACTTCAACCTGGGCCCCAACTCAGCTCCTCCTGTCATGAACATCAGTCTACCCCCACCCCCCGGTGTGGCTATGCCCCCCCCTCCAGGCTTTGGGCCACCCATGTTCCACTCCATGGACCCTATGGGGATGCCCCCTCCCATGGGCATGAGGCCCCCTGGCCATGTCCACTACCCCTCCCAGGATCCACAGCGCATGGGTGCACACGCCAGCCGTCACGGAGGCTCCTAGACCCTCGTACCTCACTGTTTATGATTAACATCGTGATAATTTGACCAATTTTTGCCCTATTAATAACCGACACAGTGACTATAGTCACAGTTCACAGATGTGAGATGCTTCTTTTATATTTGTGTAATGGAGAAGAACCTCTGTTTTGTGCATCAGCAAGGTCTTGCTCGTTAGGAAACTGGAGTGCTGAACAGTATAGTTTTAAATGATTCGTTATACCTTCCTCCATTGAACCtacaagtaactgccaaaataaaggaaacaaagtgtcttaatagggtgttgggccaaaactgcttcaatgcgccttgggcATAGAactctacaagtgtctggaactctattggagggatgcgacacccattcttccacaataaataaattcatttggtgttttgttgatggtggtggaaaacgctgtctcagactCATCAGAATCTCccgtaagtgttcaattgggttgagaccGGGTGACTAAGAGACACACATTTTAAACCACCTATGCTCCTATGAGACcccttttttttccccccaaagtcactgatctcttctaaccatggtagccaaaataatgggcaactggtcattttattgcttaattaactcaggaaccacacgtGTGTGGAaacacctgctttcaatacactttgtatccctcattttctaaagtgtttcctttattttggcagttacctgtatgttctATCTCTGACTTGTATATttgaaagggggagggagggttaCGTTTGCAAGTTGTGCATATTGTACTGAACCTTTCTTATAGAGAATGTCTCCATTTCTACAATTCTTTTTCCTTATAATGCATTTTATGCAGAATTGTCCGACGTTAACGTTCTTCAGAACAACCAATTGTTAAGACCATTTTACTTCCATGTGGTGGCACTATTATCTAAAGATTGAAGGTGTCCATGACTCCACAGCATTGTCAACGTCTTTTATTATAACTGTGAAAAGTGTATGGTTAACATTTTTGCTTCATTAAACATATCCTTTCTTTTAAA

Function

GO:

id name namespace
GO:0033120 positive regulation of RNA splicing biological_process
GO:0045292 mRNA cis splicing, via spliceosome biological_process
GO:0009790 embryo development biological_process
GO:0005681 spliceosomal complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0017069 snRNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0036002 pre-mRNA binding molecular_function

KEGG:

id description
K01892 HARS, hisS; histidyl-tRNA synthetase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2492491 lncRNA downstream 8572 37049381 ~ 37050622 (-) True G2180600
TU2492490 lncRNA downstream 10212 37048291 ~ 37048982 (-) False G2180600
TU2492486 lncRNA downstream 11655 37047287 ~ 37047539 (-) True G2180598
TU2492482 lncRNA downstream 15824 37043166 ~ 37043370 (-) True G2180594
TU2492481 lncRNA downstream 16453 37042479 ~ 37042741 (-) True G2180593
TU2493061 lncRNA upstream 25095 37097858 ~ 37111700 (-) True G2181060
TU2493163 lncRNA upstream 128234 37200997 ~ 37201776 (-) False G2181151
TU2493164 lncRNA upstream 128234 37200997 ~ 37201776 (-) True G2181151
TU2493174 lncRNA upstream 134809 37207572 ~ 37210952 (-) True G2181157
TU2493175 lncRNA upstream 143424 37216187 ~ 37216460 (-) True G2181158
XR_005040451.1 mRNA downstream 81518 36975909 ~ 36977676 (-) False LOC110509384
XR_002471537.2 mRNA downstream 96936 36952839 ~ 36962258 (-) False LOC110510199
XM_036967968.1 mRNA downstream 109072 36935309 ~ 36950122 (-) False LOC110510200
XM_036967193.1 mRNA upstream 162542 37235305 ~ 37238024 (-) False LOC110510193
XM_036967197.1 mRNA upstream 162542 37235305 ~ 37238282 (-) False LOC110510193
XM_036967194.1 mRNA upstream 162542 37235305 ~ 37238283 (-) False LOC110510193
XM_036967191.1 mRNA upstream 162542 37235305 ~ 37238476 (-) False LOC110510193
XM_036967192.1 mRNA upstream 162542 37235305 ~ 37238476 (-) False LOC110510193
TU2492475 other downstream 76485 36981957 ~ 36982709 (-) True G2180587
TU2492418 other downstream 79433 36977154 ~ 36979761 (-) True LOC110509384
TU2491926 other downstream 462821 36534097 ~ 36596373 (-) True LOC110510209
TU2491922 other downstream 462888 36534097 ~ 36596306 (-) False LOC110510209
TU2491944 other downstream 552074 36506540 ~ 36507120 (-) True G2180120
TU2493150 other upstream 160106 37232869 ~ 37233899 (-) True G2181143
TU2493155 other upstream 162030 37234793 ~ 37239339 (-) False LOC110510193
TU2493152 other upstream 162183 37234946 ~ 37239793 (-) False LOC110510193
TU2493153 other upstream 162183 37234946 ~ 37239339 (-) True LOC110510193
TU2493346 other upstream 410885 37483648 ~ 37484650 (-) True nsrp1

Expression Profile