RNA id: TCONS_00057375


Basic Information

Item Value
RNA id TCONS_00057375
length 473
lncRNA type inter_gene
GC content 0.30
exon number 2
gene id XLOC_028930
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 35060147 ~ 35083283 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tagaaaaaatattagcaTACCTgtggtagcaaaaaaaaaaaaaaaaatatatatatatatatatatatatatatattttttttttttttttaaataagtactttttcaAGATAATACCTCAGACTCGTTGTttagaaaaagtacaaattttagcTTACACTTAAAATCGAAACAAAGTATTTACTATTAGTGTTTATTATGTATCATTATCTGAAGACAAGATgttaaaatgtagctttaaaaaCTGTGACCCTGACCATGACCTGACCATGTAATTTAATCCAATCACAGAAACTCAAACCGACCAATCAGCAAGTGTCTGCTACCCCCCACTGTGCAAGAGGTGTGAAAAGAAGCAGGTCTCTAGCAACACCTcaactttttttttattgctttttgttcttttctctcctatgtttgaactttgaactgaactttgaacaccttgaacacttgaaacactgaaattgtca

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057374 lncRNA downstream 6797 35052439 ~ 35053350 (-) True XLOC_028929
TCONS_00058261 lncRNA downstream 203017 34847760 ~ 34857130 (-) False XLOC_028928
TCONS_00058260 lncRNA downstream 203017 34847760 ~ 34857130 (-) False XLOC_028928
TCONS_00055990 lncRNA downstream 203017 34853066 ~ 34857130 (-) True XLOC_028928
TCONS_00058259 lncRNA downstream 261304 34797793 ~ 34798843 (-) False XLOC_028927
TCONS_00057376 lncRNA upstream 407694 35490977 ~ 35493387 (-) False XLOC_028932
TCONS_00057377 lncRNA upstream 407694 35490977 ~ 35493425 (-) True XLOC_028932
TCONS_00057378 lncRNA upstream 608512 35691795 ~ 35692409 (-) True XLOC_028933
TCONS_00058262 lncRNA upstream 726170 35809453 ~ 35810787 (-) False XLOC_028935
TCONS_00058263 lncRNA upstream 726170 35809453 ~ 35811238 (-) True XLOC_028935
TCONS_00055989 mRNA downstream 260752 34798625 ~ 34799395 (-) True XLOC_028927
TCONS_00055987 mRNA downstream 284000 34753619 ~ 34776147 (-) False XLOC_028926
TCONS_00055988 mRNA downstream 284385 34753927 ~ 34775762 (-) True XLOC_028926
TCONS_00055984 mRNA downstream 579536 34449366 ~ 34480611 (-) False XLOC_028922
TCONS_00055993 mRNA upstream 767806 35851089 ~ 35899188 (-) False XLOC_028936
TCONS_00055994 mRNA upstream 809577 35892860 ~ 35900331 (-) False XLOC_028936
TCONS_00055995 mRNA upstream 809964 35893247 ~ 35989274 (-) False XLOC_028936
TCONS_00055996 mRNA upstream 865530 35948813 ~ 35963515 (-) False XLOC_028937
TCONS_00055997 mRNA upstream 876737 35960020 ~ 36026650 (-) False XLOC_028937
TCONS_00055986 other downstream 471060 34553067 ~ 34589087 (-) False XLOC_028925
TCONS_00055976 other downstream 1091795 33968210 ~ 33968352 (-) True XLOC_028919
TCONS_00055975 other downstream 1093079 33966917 ~ 33967068 (-) True XLOC_028918
TCONS_00055967 other downstream 1668226 33391775 ~ 33391921 (-) True XLOC_028910
TCONS_00055966 other downstream 1669763 33390222 ~ 33390384 (-) True XLOC_028909
TCONS_00055991 other upstream 150014 35233297 ~ 35233413 (-) True XLOC_028931
TCONS_00055992 other upstream 651723 35735006 ~ 35735169 (-) True XLOC_028934
TCONS_00056013 other upstream 1705854 36789137 ~ 36789707 (-) False XLOC_028946
TCONS_00056015 other upstream 1706896 36790179 ~ 36790965 (-) True XLOC_028946
TCONS_00056020 other upstream 2183927 37267210 ~ 37271230 (-) False XLOC_028950

Expression Profile

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