RNA id: XM_021591566.2


Basic Information

Item Value
RNA id XM_021591566.2
length 1775
RNA type mRNA
GC content 0.41
exon number 4
gene id LOC110510193
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 37234793 ~ 37241163 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aCAAGACTGCCAAAtcaaggcaaagGAAAGAAAATCGAGCCCAGTCATAAGTCAGTGGTACAGACTGACGGAGCATTGATTTGAAGACATGGCGAACGACAAGGACCCCTTGAGACCACTGAAGGACCTGGCAGAGCTCAAGGACCAGCTAGAGGACATTCAGCGGCGTGTGGAGAAGGAAGTACAGGCTGGGATCCCACAGGGTGGCAGTGTGCTGGCCTCTCCTTTCCTTAAGGGCTTCTTGGCAGGATATATTGTGTCTAGGCTGCGATCCTCTGCGGTTTTGGGTGTGATCCTTGGGACTTGCACAGGCATCTTTGCAGCTCAAAATTTTGGTGTGCCCAACATCGAGCAAACCCTGAAAGACTTTTTCAACACTCTAAAAGGACCCGGCAAATAGCAGCCCTGGTTCTGGGGGAGAAGATGGATCACTGAACCAAAAAACCTGCCCCCTAAAAAATATCCATTGAACTACTCCACTCCACAGCCTTCAGTTTTAGATTGCACAATGGTACTGAATTCagaaaaataatgttttgtttgtGTGGAGAAATTTAGGAAAAAACAATATGGTTGCTTGAATTATGCATCACGTCTTTACAATCATCTCTTGCAATGTGTGCAATACTCAGGGgcttatgtatttttttttatatatattaacTGGAAAGATAATGTTCTTATTTTATGCAATGGGGATTTTACTGATGGAAGTGGGTGCTTTTATATGGGGGGGATTTTCTTTGCCTCAGGACAGCTTTCAATTTGGTCTTGCTTGTAGATTAACCATCCAACCTTGTTATACCCAAAGTATATTTACAACATACTGTAGTACCCATATGTTAAACATGACCATGAGAATATTATGTTAATATCTACAGATCTGTCCCTAGCAAGTTCTCTGCCTATGTTCTGACTTTTAGGTCACTGTAATCCTGTATTGACCTGTTCCTAGTAGACCAGTGTTTTTTTGTGTCTGGTTGATAGTTCTGTACACTGAGTACATCACAATGCAGTCTATATAATGGTGCACAGTGACCTCTACAGGGGAACTATCGACCTGCAGTTTGCATCCATATCGGTCAGGTGGTCCTGCCAGGAGTTCCTGTGATTTAGCAAAGTAAATCCATATACCAACTGATATAACCCTGGACATATGGCTCAAGCATTGCAATTCTATTATTGTTCAGTACTGCCTTCTCAGCCAGAACGAACAACATGGGAGAAGTTTCTGATTTACCACAATACTTGTTTACTAGGCCCAATCTTGAGCCATGCACTATTAGGTTAATGATATTGTCCTCAGAGTGGGTTGTAGTCTCCTAGCTTCTAGGACCCCCAGCCGTTCCATGTATTTTAAATATTCCACAGCTAGCACACCTGgttcaactaatcatcaaaccATTGAATAGGTGCCATTTCAGAGCTAAAACTAAACTTTAAAAAATGCTAGAGGAGAGATTTGAAAACCACTGCCGTTGTCACCAGACTGACAGATGTTGGAGAGCCTAATAGAATGAGATGCTCACAGTTATTAATGTTCTCAGCCCTAACATGAAATCTATATCGGTTTCATCTCACAGTGACATGAGAAATCACCAATAGCAGAGCATTTATAATTGGTTTTCCATACATGAGGTATGCTATGTCAGTGATGTCTGTTCTTGTTGTGACAAAAATGTAGCTGCACATTTTCTTTTGCTTTGGTATGTACACTTGAAATGGTATGACATTTCATTTATACGGCAGCCCTTTTAATAAAGTGTTTCATTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2493179 lncRNA downstream 13195 37221895 ~ 37222110 (-) True G2181162
TU2493103 lncRNA downstream 14792 37218932 ~ 37220513 (-) False G2181100
TU2493106 lncRNA downstream 15389 37218932 ~ 37219916 (-) True G2181100
TU2493175 lncRNA downstream 18845 37216187 ~ 37216460 (-) True G2181158
TU2493174 lncRNA downstream 24353 37207572 ~ 37210952 (-) True G2181157
TU2493200 lncRNA upstream 35176 37276339 ~ 37276680 (-) True G2181182
TU2493202 lncRNA upstream 38132 37279295 ~ 37279587 (-) True G2181184
TU2493220 lncRNA upstream 74095 37315258 ~ 37315740 (-) True G2181200
TU2493221 lncRNA upstream 74832 37315995 ~ 37316274 (-) True G2181201
TU2493224 lncRNA upstream 78540 37319703 ~ 37319916 (-) True G2181204
XM_036967468.1 mRNA downstream 162542 37059194 ~ 37072763 (-) True LOC110510195
XM_021591571.2 mRNA downstream 166422 37059194 ~ 37068883 (-) False LOC110510195
XR_005040451.1 mRNA downstream 257629 36975909 ~ 36977676 (-) False LOC110509384
XR_002471537.2 mRNA downstream 273047 36952839 ~ 36962258 (-) False LOC110510199
XM_036967970.1 mRNA downstream 285183 36935309 ~ 36950122 (-) True LOC110510200
XM_036967496.1 mRNA upstream 43205 37284368 ~ 37296541 (-) True LOC110510188
NM_001124739.1 mRNA upstream 63036 37304199 ~ 37314162 (-) True LOC100136950
LOC118936394 mRNA upstream 76700 37317863 ~ 37318817 (-) True LOC118936394
LOC110509442 mRNA upstream 81510 37322673 ~ 37331174 (-) False LOC110509442
XM_021591558.2 mRNA upstream 143158 37384321 ~ 37388245 (-) False LOC110510185
TU2493150 other downstream 1406 37232869 ~ 37233899 (-) True G2181143
TU2492475 other downstream 252596 36981957 ~ 36982709 (-) True G2180587
TU2492418 other downstream 255544 36977154 ~ 36979761 (-) True LOC110509384
TU2491926 other downstream 638932 36534097 ~ 36596373 (-) True LOC110510209
TU2491922 other downstream 638999 36534097 ~ 36596306 (-) False LOC110510209
TU2493346 other upstream 242485 37483648 ~ 37484650 (-) True nsrp1
TU2493402 other upstream 295502 37536665 ~ 37538240 (-) True G2181304
TU2493441 other upstream 539419 37780582 ~ 37787673 (-) True G2181315
TU2494085 other upstream 919514 38160677 ~ 38174302 (-) True LOC110509458
TU2494988 other upstream 1673443 38914606 ~ 38914926 (-) True G2182508

Expression Profile