RNA id: TU2493152


Basic Information

Item Value
RNA id TU2493152
length 2181
RNA type TUCP
GC content 0.41
exon number 4
gene id LOC110510193
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 37234793 ~ 37241163 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGAACGTGGCTTAGCGTTAGGCCAGAGCAAGGAGTTGGGTAGCCAGGCAAATTCGCCCTAGTTTAAAAAAAGAAAGAAAATCGAGCCCAGTCATAAGTCAGTGGTACAGACTGACGGAGCATTGATTTGAAGACATGGCGAACGACAAGGACCCCTTGAGACCACTGAAGGACCTGGCAGAGCTCAAGGACCAGCTAGAGGACATTCAGCGGCGTGTGGAGAAGGAAGTACAGGCTGGGATCCCACAGGGTGGCAGTGTGCTGGCCTCTCCTTTCCTTAAGGGCTTCTTGGCAGGATATATTGTGTCTAGGCTGCGATCCTCTGCGGTTTTGGGTGTGATCCTTGGGACTTGCACAGGCATCTTTGCAGCTCAAAATTTTGGTGTGCCCAACATCGAGCAAACCCTGAAAGACTTTTTCAACACTCTAAAAGGACCCGGCAAATAGCAGCCCTGGTTCTGGGGGAGAAGATGGATCACTGAACCAAAAAACCTGCCCCCTAAAAAATATCCATTGAACTACTCCACTCCACAGCCTTCAGTTTTAGATTGCACAATGGTACTGAATTCagaaaaataatgttttgtttgtGTGGAGAAATTTAGGAAAAAACAATATGGTTGCTTGAATTATGCATCACGTCTTTACAATCATCTCTTGCAATGTGTGCAATACTCAGGGgcttatgtatttttttttatatatattaacTGGAAAGATAATGTTCTTATTTTATGCAATGGGGATTTTACTGATGGAAGTGGGTGCTTTTATATGGGGGGGATTTTCTTTGCCTCAGGACAGCTTTCAATTTGGTCTTGCTTGTAGATTAACCATCCAACCTTGTTATACCCAAAGTATATTTACAACATACTGTAGTACCCATATGTTAAACATGACCATGAGAATATTATGTTAATATCTACAGATCTGTCCCTAGCAAGTTCTCTGCCTATGTTCTGACTTTTAGGTCACTGTAATCCTGTATTGACCTGTTCCTAGTAGACCAGTGTTTTTTTGTGTCTGGTTGATAGTTCTGTACACTGAGTACATCACAATGCAGTCTATATAATGGTGCACAGTGACCTCTACAGGGGAACTATCGACCTGCAGTTTGCATCCATATCGGTCAGGTGGTCCTGCCAGGAGTTCCTGTGATTTAGCAAAGTAAATCCATATACCAACTGATATAACCCTGGACATATGGCTCAAGCATTGCAATTCTATTATTGTTCAGTACTGCCTTCTCAGCCAGAACGAACAACATGGGAGAAGTTTCTGATTTACCACAATACTTGTTTACTAGGCCCAATCTTGAGCCATGCACTATTAGGTTAATGATATTGTCCTCAGAGTGGGTTGTAGTCTCCTAGCTTCTAGGACCCCCAGCCGTTCCATGTATTTTAAATATTCCACAGCTAGCACACCTGgttcaactaatcatcaaaccATTGAATAGGTGCCATTTCAGAGCTAAAACTAAACTTTAAAAAATGCTAGAGGAGAGATTTGAAAACCACTGCCGTTGTCACCAGACTGACAGATGTTGGAGAGCCTAATAGAATGAGATGCTCACAGTTATTAATGTTCTCAGCCCTAACATGAAATCTATATCGGTTTCATCTCACAGTGACATGAGAAATCACCAATAGCAGAGCATTTATAATTGGTTTTCCATACATGAGGTATGCTATGTCAGTGATGTCTGTTCTTGTTGTGACAAAAATGTAGCTGCACATTTTCTTTTGCTTTGGTATGTACACTTGAAATGGTATGACATTTCATTTATACGGCAGCCCTTTTAATAAAGTGTTTCATTTCAGTGGCGTTTATTTTGACTTAATTTTATTAGCTAGAATGACAGTTACACCTTGGTTGGCCTAATCTCAGTTTTATGGTTAGCAGTGAGCAGCAGTTAGTACACCTGGCCTTGTtgtatcaaaataaagaaaatacaaCAAACGAGAACTTGTTAGTTTCCAAATCCATGTGCTGGATTATTTAGAATGTCCACAGAATCGGGGCAATCTGAAAGGAAGTGCTTAAATGTAGATATGTCTAGTGGGACAGTTTTACTGGTCCTCACAGCTCACTGGTTTTTACTCATCTGTAAATAAAGAGAAATGTACATTACCAACAGAATAGCCAGATAGTTCCTTACAGCATACACATGTAGTCAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2493179 lncRNA downstream 12836 37221895 ~ 37222110 (-) True G2181162
TU2493103 lncRNA downstream 14433 37218932 ~ 37220513 (-) False G2181100
TU2493106 lncRNA downstream 15030 37218932 ~ 37219916 (-) True G2181100
TU2493175 lncRNA downstream 18486 37216187 ~ 37216460 (-) True G2181158
TU2493174 lncRNA downstream 23994 37207572 ~ 37210952 (-) True G2181157
TU2493200 lncRNA upstream 36546 37276339 ~ 37276680 (-) True G2181182
TU2493202 lncRNA upstream 39502 37279295 ~ 37279587 (-) True G2181184
TU2493220 lncRNA upstream 75465 37315258 ~ 37315740 (-) True G2181200
TU2493221 lncRNA upstream 76202 37315995 ~ 37316274 (-) True G2181201
TU2493224 lncRNA upstream 79910 37319703 ~ 37319916 (-) True G2181204
XM_036967468.1 mRNA downstream 162183 37059194 ~ 37072763 (-) True LOC110510195
XM_021591571.2 mRNA downstream 166063 37059194 ~ 37068883 (-) False LOC110510195
XR_005040451.1 mRNA downstream 257270 36975909 ~ 36977676 (-) False LOC110509384
XR_002471537.2 mRNA downstream 272688 36952839 ~ 36962258 (-) False LOC110510199
XM_036967970.1 mRNA downstream 284824 36935309 ~ 36950122 (-) True LOC110510200
XM_036967496.1 mRNA upstream 44575 37284368 ~ 37296541 (-) True LOC110510188
NM_001124739.1 mRNA upstream 64406 37304199 ~ 37314162 (-) True LOC100136950
LOC118936394 mRNA upstream 78070 37317863 ~ 37318817 (-) True LOC118936394
LOC110509442 mRNA upstream 82880 37322673 ~ 37331174 (-) False LOC110509442
XM_021591558.2 mRNA upstream 144528 37384321 ~ 37388245 (-) False LOC110510185
TU2493150 other downstream 1047 37232869 ~ 37233899 (-) True G2181143
TU2492475 other downstream 252237 36981957 ~ 36982709 (-) True G2180587
TU2492418 other downstream 255185 36977154 ~ 36979761 (-) True LOC110509384
TU2491926 other downstream 638573 36534097 ~ 36596373 (-) True LOC110510209
TU2491922 other downstream 638640 36534097 ~ 36596306 (-) False LOC110510209
TU2493346 other upstream 243855 37483648 ~ 37484650 (-) True nsrp1
TU2493402 other upstream 296872 37536665 ~ 37538240 (-) True G2181304
TU2493441 other upstream 540789 37780582 ~ 37787673 (-) True G2181315
TU2494085 other upstream 920884 38160677 ~ 38174302 (-) True LOC110509458
TU2494988 other upstream 1674813 38914606 ~ 38914926 (-) True G2182508

Expression Profile