RNA id: XM_036967585.1


Basic Information

Item Value
RNA id XM_036967585.1
length 2132
RNA type mRNA
GC content 0.50
exon number 8
gene id nsrp1
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 37482837 ~ 37498898 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGTCACTCAGGAGAGACAATGGAAGAGTCAGGATGGAATCAACGCCTCGCCTTTAATCACAGGGTAGCTCTCTGAGCACACTGATCTCTGCAGAGATAATGACAATCAGAGAAAGTGTGAAAGCGTGGGTATAAGTGGTATGGTATTACTAAGGAGAACTGGCATGGTGGTGGAGAGTCAACAACCCATGAAATTGTTATGGTTTTACGGCTTAATAGGGGCAGGATCAGAAGGCAGGGTTCGCTTGCCAACGAATCTGCCGCAGCGGTTCAGAGATATTTCAAGGAGTAAGATGGCGGCACCTAGTAAACAGTACGGCCTGATCATACCCCAGAAGAGAGCGTCTAAGACAGTCACCTTGCCCAGGCCCTCAGTGTTTGGGGATGACTCTGATGAAGAGACCTCGGTTGGGGAGAGTTTGCAGAAGGAGGCTCTGAAGAAGAGGATGATGAAACAGACACGTCTGGAGATGCAGAAGGCTCTAGAGCAGGACAGCAGTGTGTATGACTACGATGGTGTCTATGATGACATGCAGAAACAGAGGCTGGAGAGCAGCAAGAAAATGCTGGGAGGAACCGACAGGAAGccAAAATACATCAACCAGCTGCTACAAGCGGTGGAGGACAGGAAGAAGGAGCAGGAacggagagatgagaggaagattcagaaggagagagaggcggagggagAGCAGTTTGCAGACAAGGAGGCTTACGTCACctcagcctacagacagaaactcaaggagagacaggaggagctGGAAAAAGAAAAGCGAGAGGCAGCGATGGAGGcTGCTCTGGATGTGAAGAAGCAGAAAGACCTGAGTGGTTTCTACAGACACCTGCTGAACCAGACCGTAGGAGAGGAGGCCATACCAGACCGCTCTGTACCGAGGGATCAGAGTACAAAAGAAGTCAAGACAGAAGCGCCATCCCCACCGTCTTCACCTCCCTCACAAGACCACGTCCCCAGTTCCCATAGTGACAGCGAGGAGGGGCAGGATCAGAAGGCAGGGTTCAGTAAGCCGGCCCCTTGTGCCAAACGCCACTACAGACAGAGGTCCCCTTCCTCtgggagtggagaagaggagcgagagaaggatagagagagagaaaagaagagacataaagagagagaccgagaccaaggaagggatagagagagggtcagagagagagacagggaggacaggcatggtggatggagagatgagaaggatggaagaaaggagagggatagagacagagaggaggacaggagcagGGGGAGgcgggataaagagagagaggagagacacgggaagagagaaaggagcccgaaagacagagagaaggagaacggggagaaagagaaacagagggagctAGACAAAGacaaggggagagaaagggacaagggcagggagaaagagaggaataggGATGAAGAAAAGAAGACTATAAAAACCGACGGAAAGGATgaaaagaaggagggagagggttcAGCGAagaaggggaaggagggagaggggtcagagaggaaggggaaggagggagaggggtcagagaaggggaaggagggtgggtcagagaaggggaaggagagtGATTCAGagaagaagggaaaggagagagaagaggagagtaaaGTGAGTAAGTTTGTCAAGCGCAGCAGTGAGCAGACCGTGACCTCAGCCAGAGACAGATACCTGGCCAGACAGATGGCACGCTCAGCCACCAAGACGTACATAGAGAAGGAGGAggactgaacacacacaaacgatgACAGCTGTGACTGTGTGATGACAGAGGGTGTCCGATGAACTGAGACACGTCAACAGATGTGTGTGAACTTCTTTCTCTAATACACAGCACTTGACGGACCCACCAAATTAGAGTGGGGTCTCATGGTTCTACTGTCTGGGGAGAAAGATGGAATGGTAGAGAGTGATTTAAATGAATGAATGCAGGACTTGAGTTAAGTGAGAGGGTGAATAAGTGATGAAAAATGTAGTGTGAGTGAGGTGCCCCACACCAGCGAACTATGTTTTTGTTGAATatttctgttctattccatttttttttttttctgatggacagaaccgTACTTCCTGTTTATGTTGTTAATAAATGTCAACATATGGCTGGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2493344 lncRNA downstream 732 37481962 ~ 37491151 (-) True G2181265
TU2493256 lncRNA downstream 18835 37350766 ~ 37473048 (-) False G2181223
TU2493275 lncRNA downstream 18835 37350766 ~ 37473048 (-) False G2181223
TU2493252 lncRNA downstream 18835 37417565 ~ 37473048 (-) False G2181223
TU2493285 lncRNA downstream 18835 37417565 ~ 37473048 (-) False G2181223
TU2493378 lncRNA upstream 893 37499791 ~ 37500700 (-) True G2181280
TU2493382 lncRNA upstream 4596 37503494 ~ 37503814 (-) True G2181284
TU2493383 lncRNA upstream 5025 37503923 ~ 37504427 (-) True G2181285
TU2493399 lncRNA upstream 33010 37531908 ~ 37532238 (-) True G2181301
TU2493369 lncRNA upstream 39589 37538487 ~ 37540250 (-) True G2181272
XM_036967880.1 mRNA downstream 84687 37404947 ~ 37407196 (-) True LOC110509383
XM_021591557.2 mRNA downstream 103636 37384321 ~ 37388247 (-) True LOC110510185
XM_021591558.2 mRNA downstream 103638 37384321 ~ 37388245 (-) False LOC110510185
LOC110509442 mRNA downstream 160709 37322673 ~ 37331174 (-) False LOC110509442
LOC118936394 mRNA downstream 173066 37317863 ~ 37318817 (-) True LOC118936394
XM_036968211.1 mRNA upstream 53673 37552571 ~ 37559554 (-) False LOC118945348
XM_036968210.1 mRNA upstream 53673 37552571 ~ 37565815 (-) True LOC118945348
XM_036967346.1 mRNA upstream 131871 37630769 ~ 37655915 (-) False LOC110510233
XM_036967343.1 mRNA upstream 131871 37630769 ~ 37656552 (-) False LOC110510233
XM_036967347.1 mRNA upstream 131871 37630769 ~ 37656552 (-) False LOC110510233
TU2493346 other downstream 7233 37483648 ~ 37484650 (-) True nsrp1
TU2493152 other downstream 252090 37234946 ~ 37239793 (-) False LOC110510193
TU2493155 other downstream 252544 37234793 ~ 37239339 (-) False LOC110510193
TU2493153 other downstream 252544 37234946 ~ 37239339 (-) True LOC110510193
TU2493150 other downstream 257984 37232869 ~ 37233899 (-) True G2181143
TU2493402 other upstream 37767 37536665 ~ 37538240 (-) True G2181304
TU2493441 other upstream 281684 37780582 ~ 37787673 (-) True G2181315
TU2494085 other upstream 661779 38160677 ~ 38174302 (-) True LOC110509458
TU2494988 other upstream 1415708 38914606 ~ 38914926 (-) True G2182508
TU2495250 other upstream 1460741 38959639 ~ 38960457 (-) True G2182749

Expression Profile