RNA id: TU2493519


Basic Information

Item Value
RNA id TU2493519
length 3263
lncRNA type sense_over
GC content 0.41
exon number 4
gene id LOC110510233
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 37627521 ~ 37656552 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggggtcaGGGTGGCCAGGGATGGCCCTTCCACTTTAACCTGTTTGAGTCCGGCGGCAACTACCACTTCAAGTTCCACCACTAGTACTACATAATACaatgcaaaatatatatattctgtctcttcacagtaACCGTCATGCCGTAAGGTGTTCTTTTATCTGGGTTTTAAAGTATTCTTTTATTGCTATCTTGAGTTACCTGGCttggcagagagttccatgtagtcatcaTTGCTCTATGTgcgtttcccagcctctcttcaggacctggggactgtgaagaggccTCTGATTGCATGTCTTCTGTTGTACTGAGTGTCCGACCTGTGTaccaactgcttgaacagacaaGTTTGGTACATTTTAACGCATCAACACCTcaacacaaagaccaatagttgCGAtacagtcaatctctcctcaacgTTGAGCCTGGAGAGACTGACATGCGTACCACTGACATTTGCCCTCTTGTGTACATTTAAGTGCAATACGTACCACTCTGTTCTGGACCAACTGGAATTTTTCACCCGAGTGGTCAAAGACACAAAGTCCTGTATAGGTGTGCTGTTCAGTCCTCCCATCTAGACCCAGGCTGTTCATGCTGTCATTACATTCCTCAAACTACCCATGTTGTTGTTCTTTAGTATGTTGATCTGCTACTTTTGCTTTGTGGTTGTGCCATTTTCTTCCGCCTCATTCTTTCTCGAAGGGCTTGTTTTGGTAGCAGCAtagcatgttttggtttttgctctgctaGAAGAGCCTGGGTGCTGGACTGTTTCTCCATTTATTTAATAACGCTAGGCCAAGCTCAAGTCGCATAAAAGCAGATTCAGAATGACACCCAAGCTATTCAAACAGATTACAATCAGAGATGCTTTCAGAATGTTTTATACGAGATGTTTGTTCTCTTCACCACACAAACAATATTAAGTGTCTGTTCTGTTTGTTATATTTCTATCTGCAAAGTTTTCAACGTTCTCCACTGAATATACCCTTGAATCTACTTAATTGACACAACAGGTGTTGTGAAATATTTAGTGACTTAATCCTTCCTGGTTGTGTATCCAAtcaccatagagaatgatagatgCCTCTAGTTGCCAAAAGGCAGTTTTAGCATTGGCAGTGCCATTTGAGGACTTAgaccattttaatgtagtcaaatGGGTGGGACTTTCAACTTCGTTGGCTGAACCCTTCCGATGACCTGGTTGGAGtggaatcaaatcaaaatcaaatcaaatgttattggtcacattcacatgttatcagatgttaatgtgagtgtagggaaatgcttgtgcttctagttccaacagtgcagtaatatctaacaagttatctaacaattccccaacaactacctaatacacacaaatccaacaaataatctaacaattccccaacaactacctaatacacacaaatccaacaagttatctaacaattccccaacaactacccaatacacacaaatccaacaagtgatctaacaattccccaacaactacctaatacacacaaatccaacacgtaatctaacaattccccaacaactacctaatacacacaaatccaacaagttatctaacaattccccaacaactacctaatacacacaaatccaacaagtgatctaacaattccccaacaactacctaatacacacaaatccaacacgtaatctaacaattccccaacaactacctaatacacacaaatccaacaagtgatctaacaattccccaacaactacctaatacacacaaatccaacaagttatctaacaattccccaacaactacctaatacacacaaatccaacaagttatctaacaattccccaacaactacctaatacacacaaatccaacaagtgatctaacaattccccaacaactacctaatacacacaaatctaaaggggtgaatgagaatatgtacgtatattttaccttttattttactaggcaagtcagttaagaacaaattcttattttcaatgacggcctaggaacagtgggttaactgccttgttcaggggcagaacgacagatgtgtaccttgtcagctcggggattcgatcttgcaacctttcggttacgagtccaacgctctaaacactagactACGCTGCCGCCCCGACCCATATGgatgagcggcataggcaaggtgcagtagtccaatgctctaaacaCTAGACTACGCTGCCGCCCCGACCCATATGgatgagcggcataggcaaggtgcagtagtcCAACGCTCAAAACACTAgactacgctgccgccccaaccCATATGgatgagcgatgtccgagcggcataggcaaggtgcagtagatggtataaaacagtatatacatgtgacaTGAGtcatgtaagatatgtaaacattacgAAAGTGGCACTGTTTAAAGTGCCTAGTGATCCATCTATTAAAGTGTCATGTTCAaccgggtcatcaggagggatcagccaatcacGAAGGAAAAAAATGTAGTTTGCTCAATGGCTCAGCCCATGCTGTCAAAGACGCTATAATGgcacaggtacaaagacgagacctctctctttctatgccAATCACACGACCCCTTCCTAGTTGTGTACCCAATCAAAGGGGTGAGAGTGAAGCTTGTCTGTCTTCTTCCTGAAAGAGCCTGCGTTGTTGCGTTCTCCTTCTTTTTTCATTGATTTCAAAGCATGTCTTTTTTGTGGTCTTTTATTTTTCAATTTGCTTTCTTTTTAATAACCTCCATATGTTGTCCACTCGTCATGATGTTATTGAAAATGTATAAGAAAAATGGAGAGCCGCACCCTTGAGGGAGCTCGGATGCAATAATTTATTAACCAATGTTAATAACATAGGTTTCTTTCTATGTTCCAGCATTTCTAGGGAGTctttccaagccaccgtgcttctacatctgcatggcTTGCTCTCTGGCTTAGGTTCGGTTTCTGTGTAAGCAGTTTATGACAactactgatgtaaaaagggttttataaatatatttgattggaTTGTCAATATCAACTATAAGTTGAATTTGAATTCTAAGGATACAGTATAGCTGTAACTGAAAGCTTTGAACGTCACTGACTGCTAAATTACGTGATCATTTAACAAGGTTGTCGTCACATTAAAATGAACTGCCTGGAACGGTTATTTTATGGTTTCTATGGACAGTTTTTTTCATTGCCAAACAGAATGAAATGAAATTCTCGACTGTATTAAAAAATGGAAGTAAACCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2493369 lncRNA downstream 87271 37538487 ~ 37540250 (-) True G2181272
TU2493399 lncRNA downstream 95283 37531908 ~ 37532238 (-) True G2181301
TU2493383 lncRNA downstream 123094 37503923 ~ 37504427 (-) True G2181285
TU2493382 lncRNA downstream 123707 37503494 ~ 37503814 (-) True G2181284
TU2493378 lncRNA downstream 126821 37499791 ~ 37500700 (-) True G2181280
TU2493549 lncRNA upstream 27328 37658724 ~ 37658958 (-) True G2181369
TU2493413 lncRNA upstream 33759 37665155 ~ 37666146 (-) False G2181312
TU2493422 lncRNA upstream 33759 37665155 ~ 37670911 (-) False G2181312
TU2493412 lncRNA upstream 34821 37666217 ~ 37670911 (-) False G2181312
TU2493415 lncRNA upstream 34821 37666217 ~ 37670911 (-) False G2181312
XM_036968210.1 mRNA downstream 61706 37552571 ~ 37565815 (-) True LOC118945348
XM_036968211.1 mRNA downstream 67967 37552571 ~ 37559554 (-) False LOC118945348
XM_036967585.1 mRNA downstream 128623 37491883 ~ 37498898 (-) False nsrp1
XM_036967880.1 mRNA downstream 220325 37404947 ~ 37407196 (-) True LOC110509383
XM_021591557.2 mRNA downstream 239274 37384321 ~ 37388247 (-) True LOC110510185
XM_036967344.1 mRNA upstream 292 37631688 ~ 37656552 (-) False LOC110510233
XM_036967345.1 mRNA upstream 302 37631698 ~ 37656552 (-) False LOC110510233
XR_005040359.1 mRNA upstream 33757 37665153 ~ 37668711 (-) True LOC118945268
XM_036967348.1 mRNA upstream 39313 37670709 ~ 37716255 (-) False LOC110510234
XM_036967349.1 mRNA upstream 39313 37670709 ~ 37716255 (-) True LOC110510234
TU2493402 other downstream 89281 37536665 ~ 37538240 (-) True G2181304
TU2493346 other downstream 142871 37483648 ~ 37484650 (-) True nsrp1
TU2493152 other downstream 387728 37234946 ~ 37239793 (-) False LOC110510193
TU2493155 other downstream 388182 37234793 ~ 37239339 (-) False LOC110510193
TU2493441 other upstream 149186 37780582 ~ 37787673 (-) True G2181315
TU2494085 other upstream 529281 38160677 ~ 38174302 (-) True LOC110509458
TU2494988 other upstream 1283210 38914606 ~ 38914926 (-) True G2182508
TU2495250 other upstream 1328243 38959639 ~ 38960457 (-) True G2182749
TU2495799 other upstream 1727795 39359191 ~ 39370231 (-) True LOC110509389

Expression Profile