RNA id: TCONS_00056004


Basic Information

Item Value
RNA id TCONS_00056004
length 3077
RNA type mRNA
GC content 0.40
exon number 3
gene id XLOC_028939
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 36132112 ~ 36144500 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aaaaaagacttttattttggcgtggcgtgtgacgtcataaggctgcgccgctcctGCGCTGGAATTCAACTGGAGAGAGGATATAGTGTCCAAACGGAGAAAAAAtcctgctgaagtgactgatctccacactgttataaagatggtgtttattaaagaggagagtgaagatgtgaagattgaagaaacgttcacagtcaaacaggaagatctgcaggaacaaacagaccgaattgaagagaatgaggggagaaaagaggaggaacatcatgtcaaaattgagaaaaaaactcatttacagactgatggtattttgaaaaggagagacaagaatcgtttcacctgcactcagtgtggaaagagttttggaagaaaaggctatcttaagattcacatgatgatccacactggagagaaaccattcacatgcactcaatgtgggaagagtttcaaccgatcatcatcccttaataaacacataaaaatccacactggagagaaaccattcacatgtactcagtgtgggaagagtttcaaccaatcatcatcccttaacaATCACAtaaaaatccacactggagagaaaccattcacatgtactcagtgtgggaagagtttcaaccaatcatcatcccttaacaatcacatgaaaatccacactggagagaaaccattcacatgtactcagtgtgggaagagtttcaaccaatcatcataccttaatctacacatgaggattcacactggagagaaaccattcacatgcactcagtgtggaaggagtttcaaccgatcatcatccattaataaacacatgaaaatccacactggagagaaaccattcacatgcactcagtgtttgaagagtttcaaccgatcaTCACATCTTAATAatcacatgaaaatccacactggagagaaaccattcacatgtactcagtgtggaaagagtttcagccaatcaacataccttaataaacacatgaggatccacactggagagaaaccattcacatgcacccagtgtgagaagagtttcaaccaatcatcgtcccttaataaacacatgaaaatccacactggagagaaaccattcacatgcacccagtgtgggaggagtttcaaccaatcatcacaccttaacaGTCACATGAatatccacactggagagaaaccattcacatgcacccagtgtgggaagagtttcaaccaatcatcatcccttaataaacacataaaaatccacactggagagaaaccattcacatgtactcagtgtgggaagagtttcaaccaatcatcatcccttaacaatcacatgaaaatccacactggagagaaaccattcacatgtactcagtgtgggaagagtttcaaccaatcatcataccttaatctacacatgaggattcacactggagagaaaccattcacatgcactcagtgtggaaggagtttcaaccgatcatcatcccttaataaacacatgaaaatccacactggagagaaactattcacatgtactcagtgtggaaagagtttcagccaatcaacataccttaataaacacatgaggatccacactggagagaaaccattcacatgcacccagtgtgggaagagtttcaaccaatcatcatcccttaataaacacataaaaatccacactggagagaaaccattcacatggactctgtgtgggaagagtttcagccaatcatcatcccttaatctacacatcatgagccacactggagagaaactattcatgtctaatcatcttgtttaatcccgctccttttcgcagcgctgtacaacagaatttctcATGCTCAAACACTAGAGTGACCGCAGCTTcgatgtgggatgagtttcagcaactcatcagaacttaataaacacatgaagacccacactggtgTGAACGAGTATATGTGCTTTAaatgtgagaagacttttattacagctcaaATTGAAACTGCAGGagacgattcacactggagagaccgcacaagtgttcacactgacaagaggtttaatcagttaacaaatctgaaaacacaaaagagaattcacactggagagaaaccatacagaTCTGATCAATGTCTACAGAGTTTCACTCATTCGGcacagcttaagaaacacatggacaaaaagttgcacacatgacatgaatgcagcaaaacattttctcatgtgcacaggatttttcatgtctgaataatgtttcaAAAGGCTGAGTGATAGTATACTGTgttccaacactcctacactgcagtaggtggggttgtaaatgtgctGTGATCCTCGTGTTTACCGTAAACACAATGATGGCAGCTGagtgaagaacagtttcataaacatctgacaAACAGCACCTCTGCTGCTTaaaatctctttgcaagtgattgtacaggtgcggataaatctgtactccactctccagtgtattcatgtagctagtgttgttttagaTGATGTTCACTGTCTGGCTCCCTGAATAAGAAACAAGTCACTGGAAAGATACCGCACACCAAAGAAGGTATTTCCAGTATACCAGGGCCTCAAGTTTAGAAAGCCCATTTAATTGTCCTGTGTTGCAGCTTTTATTAGTAAAGTTTCTTTACTATTATGTTTAAGATTTTTTctagtttactacatttacttGTTTGAGTAGAATACGaacttgatgaatattttatgatttaggcagagcgacaggtattaagttttacaatattactaCACTGTAATGATCCCAGGACTTCCgattggagtatgtggtaaatcctgattgaatgcctgcattactcatcaatgggtaTATGAAAGTTGTTGTGTTAGCTACCCCAGGACGCTGATGCTACTTGggagtcctcatgtcaagacctgccatttcattgactctttaaccttatagttttgttttgcattacttatatcATGCAGTTAAAgttttgttgtgattatatcctaagttctttatctttattattatctaTAGGCATTTGTTGGTTCctttgattgattgttctatgagttacttttataataaatcatttgcattcaagcta

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000170896

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058263 lncRNA downstream 320874 35809453 ~ 35811238 (-) True XLOC_028935
TCONS_00058262 lncRNA downstream 321325 35809453 ~ 35810787 (-) False XLOC_028935
TCONS_00057378 lncRNA downstream 439703 35691795 ~ 35692409 (-) True XLOC_028933
TCONS_00057377 lncRNA downstream 638687 35490977 ~ 35493425 (-) True XLOC_028932
TCONS_00057376 lncRNA downstream 638725 35490977 ~ 35493387 (-) False XLOC_028932
TCONS_00058264 lncRNA upstream 350458 36494958 ~ 36496294 (-) True XLOC_028941
TCONS_00057379 lncRNA upstream 436703 36581203 ~ 36583368 (-) True XLOC_028943
TCONS_00058265 lncRNA upstream 440819 36585319 ~ 36585639 (-) True XLOC_028944
TCONS_00057380 lncRNA upstream 619640 36764140 ~ 36770657 (-) False XLOC_028945
TCONS_00056012 lncRNA upstream 619681 36764181 ~ 37172305 (-) True XLOC_028945
TCONS_00056000 mRNA downstream 98658 35963172 ~ 36033454 (-) False XLOC_028937
TCONS_00056003 mRNA downstream 98735 36026204 ~ 36033377 (-) True XLOC_028937
TCONS_00055999 mRNA downstream 99182 35963172 ~ 36032930 (-) False XLOC_028937
TCONS_00055998 mRNA downstream 99935 35960020 ~ 36032177 (-) False XLOC_028937
TCONS_00055997 mRNA downstream 105462 35960020 ~ 36026650 (-) False XLOC_028937
TCONS_00056009 mRNA upstream 329281 36473781 ~ 36476889 (-) False XLOC_028940
TCONS_00056010 mRNA upstream 329513 36474013 ~ 36484943 (-) True XLOC_028940
TCONS_00056011 mRNA upstream 361939 36506439 ~ 36522557 (-) True XLOC_028942
TCONS_00056014 mRNA upstream 644637 36789137 ~ 36791395 (-) False XLOC_028946
TCONS_00056016 mRNA upstream 647232 36791732 ~ 36792144 (-) True XLOC_028947
TCONS_00055992 other downstream 396943 35735006 ~ 35735169 (-) True XLOC_028934
TCONS_00055991 other downstream 898699 35233297 ~ 35233413 (-) True XLOC_028931
TCONS_00055986 other downstream 1543025 34553067 ~ 34589087 (-) False XLOC_028925
TCONS_00055976 other downstream 2163760 33968210 ~ 33968352 (-) True XLOC_028919
TCONS_00055975 other downstream 2165044 33966917 ~ 33967068 (-) True XLOC_028918
TCONS_00056013 other upstream 644637 36789137 ~ 36789707 (-) False XLOC_028946
TCONS_00056015 other upstream 645679 36790179 ~ 36790965 (-) True XLOC_028946
TCONS_00056020 other upstream 1122710 37267210 ~ 37271230 (-) False XLOC_028950
TCONS_00056021 other upstream 1124067 37268567 ~ 37270590 (-) False XLOC_028950
TCONS_00056022 other upstream 1124162 37268662 ~ 37271042 (-) True XLOC_028950

Expression Profile

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