RNA id: TU2498512


Basic Information

Item Value
RNA id TU2498512
length 1532
RNA type TUCP
GC content 0.46
exon number 3
gene id LOC110509471
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 41502509 ~ 41530610 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaTGAACTGGTCCTGGTCTCAGAGAACAAGACGTGGTCAGAAGCCCTGCGACACTGCAGAGACCAGAACATGGAGCTGGTGTCTGCCCACAAACAGAACATCCAGCACTGGGTTCAACAGAGAGCCAAGAAGGCCTCCACTCCCTTCGTCTGGCTGGGCCTGAGGTACACCTGCACTCTGGACATCTGGTTCTGGGTCAATGGAGAAGAGTCCTGCTACCACAACTGGGCTGACGGGGAGGGCTACAACACCATGAAGGAGCAGTGTGGGAACATGGGGGCCATTCAGAGAGACGGGGGACGGTGGGTCGGCAAGTCTGAGACTGAGAGATTCAACTTCATCTGCAGCAACAGTACTGATTACTAGGACCAGAGCCTGTTCTCTGGACCAGCTGAACCGTACCGTCCAGAATGTTCCAGACCCTGTTCTCTGTAGACCAGCTGAACCGTACAGTCCAGAATGTTCCAGACCCTGTTCTCTGTAGACCAGCTGAACCGTACAGTCCAGAATGTTCCAGACCCTGTTTTCTGTAGACCAGCTGAACCCTAAAGTCCAGAATGTTCCAGACCCTGTTCTCTGTAGACCAGCTGAACCCTACAGTCCAGAATGTTCCAGACCCTGTTCTCTGGACCAGCTGAACCGTACCGTCCAGAATGTTCCAGACCCTGTTTTCTGTAGACCAGCTGAACCGTACAGTCCAGAATGTTCCAGACCCTGTTCTCTGTAGACCAGCTGAACCGTACAGTCCAACACATTGTTCCAGACCCTGCTCTGTAGACCAGCTGAACCCTACAGCCCAACACATTGTTCCAGACCCTGCTCTGTAGACCAGCTGAACCCTACAGCCCAGAATGTTCCAGATATACTCAGATGTACATCATACAAGGTGACGGATACtcattattttaaatatatatttttatttgtttacagtgagctccaaaagtattgggacagtaacAAATGTTTAGtagttttggctctgtactccaacaTTTTCATTGCAtcctaggaatatgggaccaaatacttagcTTTTGACTATTTTAGCACATATtgaagtgaatttgtcccaatacttttggtccacTAAAATGGGGACTATGTTCGAAAAGTGCAGTCATTTCTAAACGATtaacccgatatggatgaaaatactgACTGTCTGGACTTTAACCTCATACTCATTGTATTATTAAagatccaaagtgctggagtacagagccagaaAAACACACAGAGTGTCTCTGTCCCGatactgttggagctcactgGAAATAAAACATAGAACTACATAGAGCTCTCTGGAAATAAAACATAGAGCTACATAGAGCTCTCTGGAAATAAAACATAGAGCTACATAGAGCTCACTGGAAATAAAACATAGAGCTACATAGAGCTCACTGGAAATAAAACATAGAGCTACATAGAGCTCACTGGAAATAGAATGTTGCGCTACATAGAGCTCTCTGGAAATAATTAGCTATTTTCTATTACAACTTGCTGTTACTGTTTCCAGAGTCTATTTCACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2498530 lncRNA downstream 16280 41483502 ~ 41486229 (-) True G2185366
TU2498516 lncRNA downstream 37928 41463989 ~ 41464581 (-) True G2185355
TU2498515 lncRNA downstream 37973 41463989 ~ 41464536 (-) False G2185355
TU2498513 lncRNA downstream 39082 41462354 ~ 41463427 (-) True G2185353
TU2498506 lncRNA downstream 45365 41456432 ~ 41457144 (-) True G2185348
TU2498555 lncRNA upstream 59468 41568787 ~ 41569777 (-) False G2185389
TU2498556 lncRNA upstream 59468 41568787 ~ 41569777 (-) False G2185389
TU2498557 lncRNA upstream 59468 41568787 ~ 41569777 (-) False G2185389
TU2498558 lncRNA upstream 59468 41568787 ~ 41569777 (-) False G2185389
TU2498559 lncRNA upstream 59468 41568787 ~ 41569777 (-) True G2185389
XM_036967726.1 mRNA downstream 4687 41470751 ~ 41497822 (-) True LOC110509470
XM_036967725.1 mRNA downstream 178905 41189419 ~ 41323604 (-) False trpc4a
XM_036967317.1 mRNA downstream 353054 41056675 ~ 41149455 (-) False postna
XM_036967318.1 mRNA downstream 353054 41056675 ~ 41149455 (-) False postna
XM_036967319.1 mRNA downstream 353054 41056675 ~ 41149455 (-) False postna
XM_036967385.1 mRNA upstream 72230 41581549 ~ 41612717 (-) False LOC110510270
XM_036967386.1 mRNA upstream 72230 41581549 ~ 41612720 (-) False LOC110510270
XM_021591658.2 mRNA upstream 72231 41581550 ~ 41612718 (-) True LOC110510270
XM_036967652.1 mRNA upstream 385430 41894749 ~ 42014803 (-) False trim3b
XM_036967651.1 mRNA upstream 385430 41894749 ~ 42036198 (-) False trim3b
TU2497337 other downstream 775495 40724969 ~ 40727014 (-) True sparta
TU2497341 other downstream 793423 40697874 ~ 40709086 (-) True ccdc169
TU2497171 other downstream 1009740 40488925 ~ 40492769 (-) False G2184242
TU2497126 other downstream 1121084 40378670 ~ 40381425 (-) True G2184224
TU2496135 other downstream 1536606 39962428 ~ 39965903 (-) True G2183457
TU2498510 other upstream 254 41509573 ~ 41510401 (-) True LOC110509471
TU2498601 other upstream 86333 41595652 ~ 41595929 (-) True G2185427
TU2498705 other upstream 342881 41852200 ~ 41853006 (-) True G2185525
TU2499343 other upstream 1456490 42965809 ~ 42969771 (-) False G2186010
TU2499346 other upstream 1456490 42965809 ~ 42981488 (-) False G2186010

Expression Profile