RNA id: TCONS_00056009


Basic Information

Item Value
RNA id TCONS_00056009
length 2431
RNA type mRNA
GC content 0.42
exon number 3
gene id XLOC_028940
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 36473781 ~ 36484943 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTTAATGTAACAGAAAACTCAAGTGACAAATCTGTCCACTGTCTCCTTATTATGAGCACTACatgtattattttcagtgtttgtaagatatatctgtatgtgtttgcctgtaaatgtgtaattacagtagttttatctgttaacagtgttgaatatGAGTCAGCAGATTCAGGAGACGACCCTCACAGGAGcttcacagacaatctccagtcAATCTTCCAGaatcttgagagtaaaatgatcagatttctgaagaatgaattggagaaatttaagaaaatcttacaagaagaaaacagacaagagtttATAAAAGAgtttaatgagaacagaagcattatcacagaagcagctcttgatctcacactcttcttcctgagagagatgaagcaagatcaagctgctgatactctccaggatgagctgttcttcattaatcagcttaaatgtagcctgaagaagaaatatcacagtgtgtttgaaggaattgctcagcaaggagactccacacttttGAATaccatctacacagatctctatatcactcagggtgcgagtgaacaggtcaacactgaacatgagatcagacagattgaagctgcttccagacgtcatcagtcactagagatacaggttgaatgcaaacatttgtttgaagcagctgaacaagacgagcagatcagaactgtcctgacaaaaggagttgctggcatcgggaaatcagtctctgtgcaaaagtttgttctggattgggctgaagggaaagaaaatcaagacatcagcttcatatttcctcttccattcagagagatgaacttaaaggagaaagaacgacaaagtttaaaagacctcataactcagtttttcccagagactaaaggaatgaaccttacaagaagcacacgattcaaagtcctgttcatccttgatggattggatgagtgtcgtcttcctctgaactttgctggtaatgagacgtgtggtgatgtatcttcagcagtctctctggatgttctcctaaCGAAcatcatcaagggaaatctgcttccttctgctctcatctggatcaccagcagaccagcagctgccagtaagattcctgctgactgtatcgaccggctgacagagatacgaggattcaatgatgcccaaaaggaggagtacttcagaaagagactcacagatcagaatcaggccagagaaatcattgatcacattaaacagtcaaagagtctctttattatgtgccacatcccagtcttctgctggatttcagccactgttctccagaacatactgaaactgaaacacagggctcatgctgaaacactgcaggaatctcccaagactctgacacagatgtacacacactttctccgctttcagatccagcagagcagaagaaagtatgatggagaaaacacagcagatgtctcctgggatccaaacctcatcctttcactggggaaactggccttccagcagctggacagaaacaatgtgatcttctatgagagcgatctgacagactgtggcattgacgtctataaggcatcggtgtactcaggcatgtgtacccagatctttaaggaggagacaggaatcattcttggtaccatgtactgctttcttcacttgagcattcaggagttcattgcagccctttatcaacatctgattctaGACAGCGACAAGAAGCATGGATGGTTTTTCATACAGATAAGCAAAAATAAAGGCGTGCTTGATTTGCTGAAGACAGCAGTagacaaggctctggaaagtgagaatggacatttggacctttaccttcgcttctttctcggtctgtcactccagtccaatAGACAACTCTTACGAGGtctgttgacacagcaggatgacagagaccagagcaaagaggaaataattgcctacatcaagcagaaacttgaagggaatctgtctccagagagatccatcaatctgttctactgtctgaatgaactgaacgaccaaactctgctgaaagagattcagtctcacctcagtagtggaagtctgtcatctgctcACCTTTCACCTGCacagtggtctgctctggtctttgtgttgttgacctcagaggaggagctggaggagtttgagcttcagaaattccagagatcagacgagtgtctcatcagactatcagcagtcatcaaaacctcAAAAAGAGCTTTGTAAGTCAAAGTGCTTCATTCTTTCATCTGtgaagtccatctattagcccaatgaggAAACTAACAGCGTGGTCAAAGGTTatatgcatgtaagccttttctagtgcttctgaaaataattttgttatttattagaatttatttatatttgttttttagctctaaatttaatctgactccaattttaagtaACCATCAAATTTAgactacactgttagaccttaccaggctt

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000163956

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058263 lncRNA downstream 662543 35809453 ~ 35811238 (-) True XLOC_028935
TCONS_00058262 lncRNA downstream 662994 35809453 ~ 35810787 (-) False XLOC_028935
TCONS_00057378 lncRNA downstream 781372 35691795 ~ 35692409 (-) True XLOC_028933
TCONS_00057377 lncRNA downstream 980356 35490977 ~ 35493425 (-) True XLOC_028932
TCONS_00057376 lncRNA downstream 980394 35490977 ~ 35493387 (-) False XLOC_028932
TCONS_00058264 lncRNA upstream 18069 36494958 ~ 36496294 (-) True XLOC_028941
TCONS_00057379 lncRNA upstream 104314 36581203 ~ 36583368 (-) True XLOC_028943
TCONS_00058265 lncRNA upstream 108430 36585319 ~ 36585639 (-) True XLOC_028944
TCONS_00057380 lncRNA upstream 287251 36764140 ~ 36770657 (-) False XLOC_028945
TCONS_00056012 lncRNA upstream 287292 36764181 ~ 37172305 (-) True XLOC_028945
TCONS_00056004 mRNA downstream 329281 36132112 ~ 36144500 (-) False XLOC_028939
TCONS_00056008 mRNA downstream 329854 36133400 ~ 36143927 (-) False XLOC_028939
TCONS_00056007 mRNA downstream 329854 36133400 ~ 36143927 (-) False XLOC_028939
TCONS_00056006 mRNA downstream 329854 36133400 ~ 36143927 (-) True XLOC_028939
TCONS_00056005 mRNA downstream 334196 36133246 ~ 36139585 (-) False XLOC_028939
TCONS_00056011 mRNA upstream 29550 36506439 ~ 36522557 (-) True XLOC_028942
TCONS_00056014 mRNA upstream 312248 36789137 ~ 36791395 (-) False XLOC_028946
TCONS_00056016 mRNA upstream 314843 36791732 ~ 36792144 (-) True XLOC_028947
TCONS_00056017 mRNA upstream 315385 36792274 ~ 36793658 (-) True XLOC_028948
TCONS_00056018 mRNA upstream 753698 37230587 ~ 37236494 (-) False XLOC_028949
TCONS_00055992 other downstream 738612 35735006 ~ 35735169 (-) True XLOC_028934
TCONS_00055991 other downstream 1240368 35233297 ~ 35233413 (-) True XLOC_028931
TCONS_00055986 other downstream 1884694 34553067 ~ 34589087 (-) False XLOC_028925
TCONS_00055976 other downstream 2505429 33968210 ~ 33968352 (-) True XLOC_028919
TCONS_00055975 other downstream 2506713 33966917 ~ 33967068 (-) True XLOC_028918
TCONS_00056013 other upstream 312248 36789137 ~ 36789707 (-) False XLOC_028946
TCONS_00056015 other upstream 313290 36790179 ~ 36790965 (-) True XLOC_028946
TCONS_00056020 other upstream 790321 37267210 ~ 37271230 (-) False XLOC_028950
TCONS_00056021 other upstream 791678 37268567 ~ 37270590 (-) False XLOC_028950
TCONS_00056022 other upstream 791773 37268662 ~ 37271042 (-) True XLOC_028950

Expression Profile

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