RNA id: TCONS_00058265


Basic Information

Item Value
RNA id TCONS_00058265
length 321
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id XLOC_028944
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 36585319 ~ 36585639 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

agATGACAAGGATATGGGAGGGAAAAAATTCAAGACTGAAGGTAGGCACAGGGTTTGGGGTTTGGTGGGGGTTGCTTTTTTAGGTGGATTGTCACTAAATAGGTTTTATTCACTATTTTTGTATATAAATGTTATCTGTATTAGTGTGACTCAACAAAGTATGGGGTAATTTTGGGAGCTGTTCATGAACCTGGTCACTGGATTTTGGTGGTAAGTAAAAATTACTCACAATAGCTGTGAaacatgatgatgataatataatctaaaataatataaaaaatacatcataATACAACAATCTACAGGCCATCTTTCCGGACC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057379 lncRNA downstream 1951 36581203 ~ 36583368 (-) True XLOC_028943
TCONS_00058264 lncRNA downstream 89025 36494958 ~ 36496294 (-) True XLOC_028941
TCONS_00058263 lncRNA downstream 774081 35809453 ~ 35811238 (-) True XLOC_028935
TCONS_00058262 lncRNA downstream 774532 35809453 ~ 35810787 (-) False XLOC_028935
TCONS_00057378 lncRNA downstream 892910 35691795 ~ 35692409 (-) True XLOC_028933
TCONS_00057380 lncRNA upstream 178501 36764140 ~ 36770657 (-) False XLOC_028945
TCONS_00056012 lncRNA upstream 178542 36764181 ~ 37172305 (-) True XLOC_028945
TCONS_00058266 lncRNA upstream 681571 37267210 ~ 37271230 (-) False XLOC_028950
TCONS_00057382 lncRNA upstream 686379 37272018 ~ 37273043 (-) False XLOC_028951
TCONS_00057381 lncRNA upstream 686379 37272018 ~ 37273043 (-) True XLOC_028951
TCONS_00056011 mRNA downstream 62762 36506439 ~ 36522557 (-) True XLOC_028942
TCONS_00056010 mRNA downstream 100376 36474013 ~ 36484943 (-) True XLOC_028940
TCONS_00056009 mRNA downstream 108430 36473781 ~ 36476889 (-) False XLOC_028940
TCONS_00056007 mRNA downstream 441392 36133400 ~ 36143927 (-) False XLOC_028939
TCONS_00056014 mRNA upstream 203498 36789137 ~ 36791395 (-) False XLOC_028946
TCONS_00056016 mRNA upstream 206093 36791732 ~ 36792144 (-) True XLOC_028947
TCONS_00056017 mRNA upstream 206635 36792274 ~ 36793658 (-) True XLOC_028948
TCONS_00056018 mRNA upstream 644948 37230587 ~ 37236494 (-) False XLOC_028949
TCONS_00056019 mRNA upstream 645203 37230842 ~ 37235635 (-) True XLOC_028949
TCONS_00055992 other downstream 850150 35735006 ~ 35735169 (-) True XLOC_028934
TCONS_00055991 other downstream 1351906 35233297 ~ 35233413 (-) True XLOC_028931
TCONS_00055986 other downstream 1996232 34553067 ~ 34589087 (-) False XLOC_028925
TCONS_00055976 other downstream 2616967 33968210 ~ 33968352 (-) True XLOC_028919
TCONS_00055975 other downstream 2618251 33966917 ~ 33967068 (-) True XLOC_028918
TCONS_00056013 other upstream 203498 36789137 ~ 36789707 (-) False XLOC_028946
TCONS_00056015 other upstream 204540 36790179 ~ 36790965 (-) True XLOC_028946
TCONS_00056020 other upstream 681571 37267210 ~ 37271230 (-) False XLOC_028950
TCONS_00056021 other upstream 682928 37268567 ~ 37270590 (-) False XLOC_028950
TCONS_00056022 other upstream 683023 37268662 ~ 37271042 (-) True XLOC_028950