RNA id: XM_036967533.1


Basic Information

Item Value
RNA id XM_036967533.1
length 1830
RNA type mRNA
GC content 0.52
exon number 10
gene id cadm2a
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 43814629 ~ 44580847 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGATTCAGGAGGTACGGTACGGTAACGCGACACTAGATCTGCAATCTATTTCATGTCGGAGGGGCGTGCATGTTTAAGggtCGTCAGGGCAGCAACCCTTGGTCCAGAATCAGACGGTAACAGAGGGGGGGACAGCCAACATGACTTGCAGGGTAGAGTACAACGACCAAACTTCCCTCCAGTGGTCTAACCCTGCACAGCAGACACTGTTCTTCGGAGACAAGAAAGcTTTGAGAGATAACCGTATCGAGCTGGTCCGAGCGTCGTGGTCGGAGCTGACCATTAGTATCAGTGAGGTGACACTGGCTGACGAGGGGATGTACACCTGTTCTCTATTCACCATGCCTGTGAAGACCGCCAAGGCCTACCTTACTGTACTGGGGGTGCCAGAGATGCCAGAGATAGACGGTCTGACAAAGCCTGCCCTGGAGGGAGATGAGATCACTCTGACCTGCATGACCCACGGCTCCAAGCCTGCTGCTGACCTCCGCTGGTTCAGGAACGAGAAGGAGATCAAAGGTGCCAAGGAGGTGAATGCCAGTGGAAAGACCTTCACAGTGACCAGTTCTCTACAGCTGCTAGTAGACCGGGACGATGATGGGGCAGCGTACACCTGTAAAGTAGACCATGTCGCCCTGTTACAGACACCACAACAGACTACCGAAGTATTGGAGGTGCACTatgctCCTCGTGTGGCGATCACCAATTCGTTGACGTTCCCTCAGGAGGGTCAATACTTGAAGCTGGAGTGTGTATCCAAAGGAAACCCATCGCCAGACCCTGTGATGTGGACTAAGGATGGAGGAGAACTTCCAGATTTGGAGCGTATGATTGTAGAGGGAAGAGAGCTCACCTTCACCACCTTGAACAAAACAGATAACGGAACGTACCGCTGTGAAGCCTCCAACCACCTGGGCACCAGCAGTGCTGAATACCTGCTCTATGTCTACGACGTCCCCagcaccctccctccatccaccaccccacctcCCCGCCCCACCCCACCAGACTCCACCGCCCCCTTAGACCCCCACCTGGCCTCCTCAGACCCTCCAAACACCAACAACAGAGACCCCAACGCCATGGGGCAGCATGGTCCAGACCATGCTCTGATTGGAGgagtggtggcggtggtggtcTTCGTCACCTTGTGTCTCATCATCGTTCTGGGCCGCTACCTGGCCAGGCATAAAGGAACGTACCTGACCAACGAGGCCAAAGGAGCGGACGACGCGCCCGATGCTGATACAGCTATCATCAACGCAGAGGGCAACACACATGCTGAGGAGAAGAAGGAGTACTTTATCTAGACTGTAGAGGGCGCTGATCTGCtgcccactctttctctctgtctttatgtctctattcctctatctccccctctcattctctttatctctttcttcaTCCCGTTCTATACTTTATTTAGACTACAGAGGGAGATATGctgccccctctttctctccctttttctctctctctctctctttccattttctccttctgtccctctctctctccactgccccTGCTGCGTCACTAAGGAAACCCCGTGGAAAAACTCCACCTTCTCCTTTTCCCCTCATCCCTTCTTCCCTGCTGGCCTTTCTGTTCTCTTTTTTTAATCATTTCATTCCGACCCTTCACTTCTTCTacacttttttaaatattttttaaccGTCCTAGTTTCTGACGCCGGCCTTCGTTTTTAAAGGCAGCGCCCTCTACTGGCTGTCTGGAGATGTTgccttttattttgtattttcttttcttTAAATTTTACATATTTTATGTGAAATAAACCCCTGAGAATCTGCATATCCACCGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2500718 lncRNA downstream 3878 43808579 ~ 43810751 (-) False G2187057
TU2500704 lncRNA downstream 3878 43808743 ~ 43810751 (-) False G2187057
TU2500707 lncRNA downstream 3878 43808743 ~ 43810751 (-) False G2187057
TU2500708 lncRNA downstream 3878 43808743 ~ 43810751 (-) False G2187057
TU2500721 lncRNA downstream 5324 43808679 ~ 43809305 (-) False G2187057
TU2500875 lncRNA upstream 14455 44162652 ~ 44166347 (-) True G2187178
TU2500902 lncRNA upstream 28813 44177010 ~ 44196992 (-) True G2187195
TU2500916 lncRNA upstream 56303 44204500 ~ 44206602 (-) True G2187205
TU2500924 lncRNA upstream 71393 44219590 ~ 44220046 (-) True G2187213
TU2500925 lncRNA upstream 71974 44220171 ~ 44220986 (-) True G2187214
XM_036968108.1 mRNA downstream 301151 43478190 ~ 43513478 (-) True map3k7cl
XM_036967729.1 mRNA downstream 344387 43450328 ~ 43470242 (-) True bach1b
XM_036968124.1 mRNA downstream 1039083 42749925 ~ 42775546 (-) False eva1c
XR_005040450.1 mRNA downstream 1074185 42734257 ~ 42740444 (-) True LOC118945309
XM_036968016.1 mRNA downstream 1207554 42579603 ~ 42607075 (-) False LOC110509472
XM_036967964.1 mRNA upstream 736240 44884437 ~ 44890751 (-) False LOC110509396
XM_036967401.1 mRNA upstream 946221 45094418 ~ 45113751 (-) False LOC110510296
XM_036967396.1 mRNA upstream 946221 45094418 ~ 45115615 (-) False LOC110510296
XM_036967395.1 mRNA upstream 946221 45094418 ~ 45115616 (-) False LOC110510296
XM_036967397.1 mRNA upstream 946221 45094418 ~ 45115616 (-) False LOC110510296
TU2500253 other downstream 20982 43791868 ~ 43793647 (-) True G2186701
TU2500208 other downstream 87782 43725159 ~ 43726847 (-) True G2186662
TU2500172 other downstream 134038 43679952 ~ 43680591 (-) True G2186630
TU2500038 other downstream 277960 43532925 ~ 43536669 (-) False G2186529
TU2500037 other downstream 280302 43532925 ~ 43534327 (-) False G2186529
TU2501022 other upstream 213401 44361598 ~ 44363487 (-) True G2187290
TU2501041 other upstream 242324 44390521 ~ 44390958 (-) True G2187307
TU2501411 other upstream 736242 44884439 ~ 44890425 (-) True LOC110509396
TU2502091 other upstream 971890 45120087 ~ 45131366 (-) True paxbp1
TU2502242 other upstream 1161089 45309286 ~ 45403361 (-) False G2188249

Expression Profile