RNA id: XM_036967530.1


Basic Information

Item Value
RNA id XM_036967530.1
length 1648
RNA type mRNA
GC content 0.53
exon number 12
gene id cadm2a
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 43814629 ~ 44580847 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCACTTTTCCGATTCTGTGTGAGAGAGCAGAGCGGACTACGGCAACATCTCTTCTTCTTAACAGAGGAAATACACACCGACTCATTCTCACAGCTACGGAGCAGTTACACCTTATCAGTACTCTACCGAATTACCGGGACATCTTCTACCCAAGGAGACTAGAATAAATAAACGAAAAACACGTTAAAACATTATTACCTATCGGTTAAATTAGAGGAGCCGATATACCGATATCCCAGCAACACGAAAGACAGACTTGGCTAGTCCACCAGGATAACATACCGGAGCTTTCGGGAGCacgaggaaagggagagggataaaggaggagaagacaggatgATTCTCAAGCATCATTTGGTTCTGACGCTGTGCGCCGTCTACGGGATACTGCTAAAAGTGACGGCACAGAAAAGCACATTGAGAGggtCGTCAGGGCAGCAACCCTTGGTCCAGAATCAGACGGTAACAGAGGGGGGGACAGCCAACATGACTTGCAGGGTAGAGTACAACGACCAAACTTCCCTCCAGTGGTCTAACCCTGCACAGCAGACACTGTTCTTCGGAGACAAGAAAGcTTTGAGAGATAACCGTATCGAGCTGGTCCGAGCGTCGTGGTCGGAGCTGACCATTAGTATCAGTGAGGTGACACTGGCTGACGAGGGGATGTACACCTGTTCTCTATTCACCATGCCTGTGAAGACCGCCAAGGCCTACCTTACTGTACTGGGGGTGCCAGAGATGCCAGAGATAGACGGTCTGACAAAGCCTGCCCTGGAGGGAGATGAGATCACTCTGACCTGCATGACCCACGGCTCCAAGCCTGCTGCTGACCTCCGCTGGTTCAGGAACGAGAAGGAGATCAAAGGTGCCAAGGAGGTGAATGCCAGTGGAAAGACCTTCACAGTGACCAGTTCTCTACAGCTGCTAGTAGACCGGGACGATGATGGGGCAGCGTACACCTGTAAAGTAGACCATGTCGCCCTGTTACAGACACCACAACAGACTACCGAAGTATTGGAGGTGCACTatgctCCTCGTGTGGCGATCACCAATTCGTTGACGTTCCCTCAGGAGGGTCAATACTTGAAGCTGGAGTGTGTATCCAAAGGAAACCCATCGCCAGACCCTGTGATGTGGACTAAGGATGGAGGAGAACTTCCAGATTTGGAGCGTATGATTGTAGAGGGAAGAGAGCTCACCTTCACCACCTTGAACAAAACAGATAACGGAACGTACCGCTGTGAAGCCTCCAACCACCTGGGCACCAGCAGTGCTGAATACCTGCTCTATGTCTACGACGTCCCCagcaccctccctccatccaccaccccacctcCCCGCCCCACCCCACCAGACTCCACCGCCCCCTTAGACCCCCACCTGGCCTCCTCAGACCCTCCAAACACCAACAACAGAGACCCCAACGCCATGGGGCAGCATGGTCCAGACCATGCTCTGATTGGAGgagtggtggcggtggtggtcTTCGTCACCTTGTGTCTCATCATCGTTCTGGGCCGCTACCTGGCCAGGCATAAAGTTTGTTTATAATCAGGTTCACTGTCAGACATCAAGGAACGTACCTGACCAACGAGGCCAAAGGAGCGGACGACGCGCCCGATGCTGATACAGCTATCATCAACGCAG

Function

GO: NA

KEGG:

id description
K06782 CADM2, IGSF4D, NECL3; cell adhesion molecule 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2500718 lncRNA downstream 4442 43808579 ~ 43810751 (-) False G2187057
TU2501158 lncRNA upstream 29893 44610740 ~ 44610975 (-) True G2187401
TU2501160 lncRNA upstream 30650 44611497 ~ 44612018 (-) True G2187403
TU2501180 lncRNA upstream 48135 44628982 ~ 44629397 (-) True G2187423
TU2501182 lncRNA upstream 49333 44630180 ~ 44630381 (-) True G2187425
TU2501197 lncRNA upstream 63294 44644141 ~ 44644602 (-) True G2187439
XM_036968108.1 mRNA downstream 301715 43478190 ~ 43513478 (-) True map3k7cl
XM_036967729.1 mRNA downstream 344951 43450328 ~ 43470242 (-) True bach1b
XM_036968124.1 mRNA downstream 1039647 42749925 ~ 42775546 (-) False eva1c
XR_005040450.1 mRNA downstream 1074749 42734257 ~ 42740444 (-) True LOC118945309
XM_036968016.1 mRNA downstream 1208118 42579603 ~ 42607075 (-) False LOC110509472
XM_036967964.1 mRNA upstream 303590 44884437 ~ 44890751 (-) False LOC110509396
XM_036967401.1 mRNA upstream 513571 45094418 ~ 45113751 (-) False LOC110510296
XM_036967396.1 mRNA upstream 513571 45094418 ~ 45115615 (-) False LOC110510296
XM_036967395.1 mRNA upstream 513571 45094418 ~ 45115616 (-) False LOC110510296
XM_036967397.1 mRNA upstream 513571 45094418 ~ 45115616 (-) False LOC110510296
TU2500253 other downstream 21546 43791868 ~ 43793647 (-) True G2186701
TU2500208 other downstream 88346 43725159 ~ 43726847 (-) True G2186662
TU2500172 other downstream 134602 43679952 ~ 43680591 (-) True G2186630
TU2500038 other downstream 278524 43532925 ~ 43536669 (-) False G2186529
TU2500037 other downstream 280866 43532925 ~ 43534327 (-) False G2186529
TU2501411 other upstream 303592 44884439 ~ 44890425 (-) True LOC110509396
TU2502091 other upstream 539240 45120087 ~ 45131366 (-) True paxbp1
TU2502242 other upstream 728439 45309286 ~ 45403361 (-) False G2188249
TU2502281 other upstream 809295 45390142 ~ 45391144 (-) False G2188280
TU2502282 other upstream 809295 45390142 ~ 45391144 (-) True G2188280

Expression Profile