RNA id: TCONS_00005300


Basic Information

Item Value
RNA id TCONS_00005300
length 2438
RNA type mRNA
GC content 0.49
exon number 15
gene id XLOC_002864
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 32264857 ~ 32494499 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACGCGAGGGTTTGCCGATCAAGGTCGCGGTAATGGCTTCCTCCTAGGCAGGACTTACTTTGTTTATATCGCCGCTGGGACCCAAGCAGTCGTGTTTAAGCGTGCTTATAGTGCTTTTTACTATACATCTGCACATTTTGGGAAGCATATTTGGACTGGGACAGTATCCTATTTAGTCGCCTATTGGGCTGAGCTGTGTTGACTGAATGACGGGATAGCTTGTAGTACCGTAAAAGGATGAACTCCATCGCCGGTCGGGATCTCTCGGTGTCCGCGGGATCTGTCAGCGGCAACCCCGGAGCGACATCTTCCAGAGTCCTGCATGTGGAGCTCACATCACAACAGAGGCGTTTGCGTCACTTGCGGAGCATAGCAGCCCGTAACATTGTGAACAAGAATGGCTCTCCTCTGCTTGACACTTACTTCACCCTCCACCTCTGCCAGGATGATCAGATATCACGAGATTTTTACAAGAGTGAAGTCATCCGAGACTCATTGaaTCCAACATGGCGGAGCTTAGATTTTGCCATGCTGCCAGACCTCCTGGACACGTCGGTTTCTTgttttgtggtgagaatatgggGTGGGAGAGAAGAACACTACCAACTGCTTATTGAGTGGAAAGTCAACCTAGATGGTCTCCGATTCACAGGACAGCAGATTCGCTCCAGAAATCCGAATGAGATCATCTTTGGACTGAACGATGGCTACTATGCAGCTGAGTTCGATCAGAAGGAGAGTTCAGACCGGAGGAAGAACAGTTTGCTTCAGGTGACTGTTCAGAAGATTGGGAAGGAAATTGAAGAGAAACTGAGGACAACAGCGTCCTGCACGGAAAAGAAGAAGGAAAGGGAGTGCATGCAGCTGCGCATTGGGATTCTGAGGTGTGAGTTGGAGAGACAGAAGAAGGCACTGACGAGAGAAATGGACGTGATGCAGAAAGAGAGAGCACAGCTTATTAAGAAAGAAGAGGCGTCATCCACCAAACAGCAGGATCTGGAGTCTGAACGCACCACTTTGACCGACCTGCAGAAGGAATGCACCGCCAAAAGAGAGCTGTTTCTAAAGTCTAAAGCCCAGCTCACCTTCCGCTGCCGGCAGCTCATATCAGAGCTTTCCTACATTTATCCCATTGATGTGAACAATCAGAACGATTATGTGATTTGTGGCGTCAAATTGCCCAATTCTGAAGACTTTCAAGCAAAGGATGATGGGAGTATTGCAGTGGCTCTTGGCTACACGGCACACCTGGTGTTGATGATTTCATGCTTCCTGCAGATTCCGCTCAGGTATCCAGTCATCCACAAGGGTTCCCGCTCCACTATTAAAGACACCATCACTGACAAACTcacagagaaggagagagaGTTCCCTCTTTACCCCAGAGGAGAGCGCTTCCAGTTTGAATATGGTGTCTATTTGCTCAACAAGAACATCGCCCAGTTGAGGTATCAGCATGGACTCTCCACACCGGACCTGCGGCAGACTTTACCCAACTTGAAGAACTTCCTAGAGCATGGGCTGCTCGTACGATGCGACAGGCACCATGCCTCCATGTCCATCCCCGTCCCTCTGAAGTCTCATCTCAGCGTTTCCACCGCATCCGAAGTGGGATTTCCGGCTCTCTCCAGTTCTCCTGAACAGGATGTCCGGAGGCGGGCTGCTTCAGATGCGGATAAACAGAAATGCCGAACACCTCCGCCTAGTTACAACACCGCCATGGCTCAACCTGATCCCATGACCACTCCGGAGCTTCAGTCAGAGCCATCTGTTGAGGTATTGGAAGTAGGTAAGGCTGTGGAAACACTTGAGGATGGAGAAACTGTGTCAGAGGAACATCCAGAGAAACCTTTGGATGTTCCTACTGATATAGTTAGTACATTACCATCCGACTCCATCCCTCAGCACCCAGGGGCGATGAATGGTTCTGCTGTGCCCACCAGTGGGGGTGTGGGATTGGGCGTTGCGAGTGGAGGAGAGGTATGCTGCTCAGTGGAGCAAGCGGAGGAGATTATGGGCACTGAAGCTACAGGATTGGGATTGGGGTTGGGAGGTGGCGCCAGACTGGACGATTACCCCTGCATCCCAGTGGAGCACGCAGTAGCGGTTGAGTGTGATGAACAGGTTTTGGGAGAGTTTGACGCCGCTGGGATTGAAGAGGTCTCACGGCGCATCTATGCACTAGAAAACATGTCGAGCTTTCGACGACCACGGAAGAACTCGGAAAAGTGATGTGGATGTAGAGCGCGGAGCAACTGGTTGAGCTGCAGGATATTTCACCTCAACCACAAGTATAGATATTGCATAAAGAAATATATGATtaatgttgttataattattaacGTTATTAGGAAAAATCCAGATTATTGACCAATTTGCACTTCTCAAAGCATTTCTATAATCCTTTCAAGTCAAATAAAGAGAATGTTTGTGGTTAAA

Function

GO:

id name namespace
GO:0035493 SNARE complex assembly biological_process
GO:0030318 melanocyte differentiation biological_process
GO:0005768 endosome cellular_component
GO:0000323 lytic vacuole cellular_component
GO:0000149 SNARE binding molecular_function

KEGG:

id description
ko04140 Autophagy - animal
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-040426-924 Predicted to enable SNARE binding activity. Acts upstream of or within melanocyte differentiation. Predicted to be active in endosome and lytic vacuole. Orthologous to human UVRAG (UV radiation resistance associated).

Ensembl:

ensembl_id ENSDART00000028161

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005771 lncRNA downstream 14011 32229939 ~ 32250846 (-) True XLOC_002863
TCONS_00006079 lncRNA downstream 14086 32216413 ~ 32250771 (-) False XLOC_002863
TCONS_00006080 lncRNA downstream 25129 32229939 ~ 32239728 (-) False XLOC_002863
TCONS_00006078 lncRNA downstream 180233 32077811 ~ 32084624 (-) True XLOC_002862
TCONS_00006077 lncRNA downstream 180736 32077811 ~ 32084121 (-) False XLOC_002862
TCONS_00006081 lncRNA upstream 90381 32584685 ~ 32591462 (-) True XLOC_002867
TCONS_00005772 lncRNA upstream 182506 32676810 ~ 32678245 (-) True XLOC_002870
TCONS_00006082 lncRNA upstream 285576 32779880 ~ 32780290 (-) True XLOC_002871
TCONS_00006083 lncRNA upstream 400693 32894997 ~ 32896944 (-) True XLOC_002875
TCONS_00006084 lncRNA upstream 664285 33158589 ~ 33164573 (-) True XLOC_002877
TCONS_00005299 mRNA downstream 458934 31800212 ~ 31805923 (-) True XLOC_002861
TCONS_00005298 mRNA downstream 482241 31738501 ~ 31782616 (-) True XLOC_002860
TCONS_00005297 mRNA downstream 701808 31300589 ~ 31563049 (-) True XLOC_002859
TCONS_00005296 mRNA downstream 702162 31298972 ~ 31562695 (-) False XLOC_002859
TCONS_00005295 mRNA downstream 824357 31298972 ~ 31440500 (-) False XLOC_002859
TCONS_00005303 mRNA upstream 7657 32501961 ~ 32524035 (-) False XLOC_002865
TCONS_00005304 mRNA upstream 8050 32502354 ~ 32524771 (-) True XLOC_002865
TCONS_00005305 mRNA upstream 40510 32534814 ~ 32558917 (-) False XLOC_002866
TCONS_00005306 mRNA upstream 40600 32534904 ~ 32558920 (-) False XLOC_002866
TCONS_00005307 mRNA upstream 40600 32534904 ~ 32610776 (-) False XLOC_002866
TCONS_00005293 other downstream 1160103 31021356 ~ 31104754 (-) True XLOC_002857
TCONS_00005286 other downstream 1733600 30531143 ~ 30531257 (-) True XLOC_002854
TCONS_00005276 other downstream 2525749 29736186 ~ 29739108 (-) True XLOC_002847
TCONS_00005273 other downstream 2556675 29708068 ~ 29708182 (-) True XLOC_002845
TCONS_00005263 other downstream 3341224 28923517 ~ 28923633 (-) True XLOC_002838
TCONS_00005308 other upstream 48232 32542536 ~ 32610769 (-) False XLOC_002866
TCONS_00005309 other upstream 73320 32567624 ~ 32610694 (-) True XLOC_002866
TCONS_00005329 other upstream 882514 33376818 ~ 33376941 (-) True XLOC_002883
TCONS_00005330 other upstream 882697 33377001 ~ 33377086 (-) True XLOC_002884
TCONS_00005331 other upstream 882826 33377130 ~ 33377214 (-) True XLOC_002885

Expression Profile

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