RNA id: TCONS_00058266


Basic Information

Item Value
RNA id TCONS_00058266
length 2246
lncRNA type inter_gene
GC content 0.43
exon number 15
gene id XLOC_028950
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 37267210 ~ 37271230 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGAAAAAACGAGAAACGTCTTCATGACATAAAAAAGGAATtcaacacaaacattcacatgAATGACCACAGCCAGGTTGTGTTAGaaAATCCATCctccacagagaaatgaatgGACATGTCACTTGGTCCACTGACAGCACTGCCAGAAAATATTGTGACTTTACAAACGACCGCTGCATCACCAGGCATAACATCAGTCACATCTCCTCTGTCATCagtaccaattacagaaaaaacagCTTGTGAACCTACCACTCTTCTGAATTTTTTGGAACCTACTAAGCCTTGGGAGAGGGACTGGCATCCATTACAAGAGAAACTGcttgATTATGTGCTGGACCGAAATCGCCCTGGCAGTGAAATAATTGTGAAGGAGGGGCAAGTGTGCCTTATTCGAGAAGAATTTTGGAGCCTTGGATTGTTGAGGGACATGGACTTCCATATTGGAAACGCCTGCATGAAGCTTATTTGTAAAATGGCTCGACAAATTGGCAAGGACATATACATTGAGGACTTTTATGTTTTCCCTGTGTGGAAAGAAACTCCTAACAACATTGTTACTGGATTACCGGAAGATGCAGACTTGAAAAACCTGTTAGCCTTTCCAGCATGGACAAATGCCAATGGACCAGACCACTTTGTTGTCTGTGAAAATTGCTTACCAAGTGGATCATGGGACATGGTCTGAAAAGACTGGATATGATTTTCCAGCTTTGCCACGTCAGACAAGAGGGAATGATTGTGGTGTTTTTGTACTCATGTACACCCTCTCAATGGTGTGTGGCATTGGGTTTCAATTCCAGgagATGGATATACCTATCATCCGTCAGTGGTGGTGCCTTCTACTCATGGAACAATTTCAAACTGATGGTAtttcaccgactcggtcccagtaactcccctcactggccagcagaggccaccatctccggacttttagcattacgtcatccatctacactgattgcgcatacacctgattggaatctggctaatgacccacgtacctcttataagccgcactcaaacactcgatcagggcgaagtcttgtttagccccggccagcatttctgagcatgatctccagcctgatctcctgtgcacgactccagcctgtctcttactttgcttcgcattctgcctgcccacgacccatgcttgttatacggactctgactctctctctgcctgcccacgaaccacgcctgttatacggactctgatccttgctgcctgcccttgacccaagcctgCATAACAGATCCTGGTTCTCGCTCACTCCCTTccactcatgcctggtaactcactctgtgtctgttcatcatcagtcttgatacccatactactactgtggatgtgtgtgtgcactccggtgcatattgtgtgtttgagtgaagttgtgattaataaatattgcataatggatccctccgtgtcagtctccacgTTACACAGTAATTATGGATTTTGTCTTGTCTTGTTATTAAAAGCTATGGGCACAGATTTGCTTTCTGGACTGAGAAGGCAAGAAGTGTCTTGGATGGAAAAATTCTGCTCCTTTTTAGGGTGAAAAGAAAAACCACATCCAATCTTCCGGCACATGTCCAAGCAGTTCAAGATTGGGAAAGGAATGACAAAAGATTAGTGGACTTGATTATCACATCAAAATCACCAGAGCAGCATTTGGTGGTATAGATGGTTCCACTTTAAATTACTCCTCTAGACTCTGAGTATGGTTGACTTAAATATAGTCAAGTGACAATTTGACTATTATTtgccaaatataattaattacttgTGCATTTACATATGAAATATAATTTCCTTCTATGGCCCAAAGGATATACTCAGTGGGAAAAGGTCAAATTGGTTTCCACTAAACCCCGTTCTCAAGTGCCTGTCTTCATTGAGAATGAGCAGTCCCAGTCAATCATTTATGACTACATCAGAGGAATTCTTAATCAAACCAAAACACAGCTGACCTTCAATGATGAGGTGGAGTTCATTTGTGGATGTCTCCTCCCAGAGGCCATAACTCATGGCATTTCCGAGTTACAAGGCTTGTCTTGGCAGGAGGCTGAAGATGTCTTCCTCCAGGGCCCCATTTATCACGCAagtgaagTTGAGGAATTTAACAGAAGAATTGCTCGagaaatgaaaaatctccccaacaagaatctcgatgacttgtaggacctcatgaaaatttataaaaaaaataaagtttgatgTGAGAAAATTA

Function

GO:

id name namespace
GO:0046040 IMP metabolic process biological_process
GO:0046083 adenine metabolic process biological_process
GO:0046084 adenine biosynthetic process biological_process
GO:0044786 cell cycle DNA replication biological_process
GO:0006188 IMP biosynthetic process biological_process
GO:0006189 'de novo' IMP biosynthetic process biological_process
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00056012 lncRNA downstream 94905 36764181 ~ 37172305 (-) True XLOC_028945
TCONS_00057380 lncRNA downstream 496553 36764140 ~ 36770657 (-) False XLOC_028945
TCONS_00058265 lncRNA downstream 681571 36585319 ~ 36585639 (-) True XLOC_028944
TCONS_00057379 lncRNA downstream 683842 36581203 ~ 36583368 (-) True XLOC_028943
TCONS_00058264 lncRNA downstream 770916 36494958 ~ 36496294 (-) True XLOC_028941
TCONS_00057382 lncRNA upstream 788 37272018 ~ 37273043 (-) False XLOC_028951
TCONS_00057381 lncRNA upstream 788 37272018 ~ 37273043 (-) True XLOC_028951
TCONS_00057383 lncRNA upstream 57297 37328527 ~ 37333793 (-) True XLOC_028952
TCONS_00057384 lncRNA upstream 107907 37379137 ~ 37380416 (-) False XLOC_028953
TCONS_00058267 lncRNA upstream 107940 37379170 ~ 37380395 (-) True XLOC_028953
TCONS_00056018 mRNA downstream 30716 37230587 ~ 37236494 (-) False XLOC_028949
TCONS_00056019 mRNA downstream 31575 37230842 ~ 37235635 (-) True XLOC_028949
TCONS_00056017 mRNA downstream 473552 36792274 ~ 36793658 (-) True XLOC_028948
TCONS_00056016 mRNA downstream 475066 36791732 ~ 36792144 (-) True XLOC_028947
TCONS_00056014 mRNA downstream 475815 36789137 ~ 36791395 (-) False XLOC_028946
TCONS_00056023 mRNA upstream 205137 37476367 ~ 37479399 (-) False XLOC_028954
TCONS_00056024 mRNA upstream 206434 37477664 ~ 37479395 (-) True XLOC_028954
TCONS_00056025 mRNA upstream 306297 37577527 ~ 37587110 (-) True XLOC_028955
TCONS_00056026 mRNA upstream 404933 37676163 ~ 37696010 (-) False XLOC_028957
TCONS_00056027 mRNA upstream 405096 37676326 ~ 37693537 (-) False XLOC_028957
TCONS_00056015 other downstream 476245 36790179 ~ 36790965 (-) True XLOC_028946
TCONS_00056013 other downstream 477503 36789137 ~ 36789707 (-) False XLOC_028946
TCONS_00055992 other downstream 1532041 35735006 ~ 35735169 (-) True XLOC_028934
TCONS_00055991 other downstream 2033797 35233297 ~ 35233413 (-) True XLOC_028931
TCONS_00055986 other downstream 2678123 34553067 ~ 34589087 (-) False XLOC_028925
TCONS_00056030 other upstream 458889 37730119 ~ 37730282 (-) True XLOC_028959
TCONS_00056031 other upstream 460199 37731429 ~ 37731577 (-) True XLOC_028960
TCONS_00056033 other upstream 750244 38021474 ~ 38021637 (-) True XLOC_028963
TCONS_00056034 other upstream 751798 38023028 ~ 38023176 (-) True XLOC_028964
TCONS_00056036 other upstream 764712 38035942 ~ 38036905 (-) True XLOC_028966

Expression Profile

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