RNA id: TCONS_00057382


Basic Information

Item Value
RNA id TCONS_00057382
length 948
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id XLOC_028951
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 37272018 ~ 37273043 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGTGCATACAGCAGTCAGCAGAGTAGTGGAGTACTTGGAGGTAACTACAGGTGTACAGTTCCCCTCAGCAGTTACTCTTCTCCACGGCTATCTGCATTTTGAGGCCCTAACTGACCATGAATACGAGTATTCATGTGTATCTTGTGGTGACCATCCACCTGTGGTCATAATGGACCTCCACAAGAAGGCATCCTTTCATCTCTCTGGTAAATATCTTTCCTTTTTACTGCAGAGAGGTAAGTCTTATTAGTAAAACTATTAGTAAGTTTatagtatgtatttattttctttagtgcGTGATCTTTCACAGCCTCCACAAGATTTTAATGGAGAGGTGGATTTAGATATGTTTTGGAAGGCACTGACAGAAGAACGAATTGCTCGAGGATTTTTTCAAGTAAGGAAATTTATTATATCAGGAATGGCATGTcatcattatttaatttcataagtGTTTTCAGGAGTACAATCTAAATTCACTGATGTATTAACATGTTTGTTTGTCCTAAAGGTCAAAAAAACAATCCATTTTGTGTTACACCTAGTTACAACTTTTGGGCACCCTGGATCGGGAGTAAGACTCATATAGCGAATGTTGTTCTCAACACTGAATTTGAGAAAGTGCACAAAGCAAAAACTGCAGAACGAACAGAAATAACTGTCTCTGAAGATCGCTTAAAGGACAAACTTTCAAAACAGAAAGTGGGAGTGATAAGAAGACTGTGTCAAGAGTGTGGTTTAGATGCCAAAGGCTCTCGCACAGATCTACTCCTGCGACTTTCGGAGGAGATGAGGTCAAGGGAGGCCTATGACAAGGTTTTTGAAAAGATTTGGGCTGCTTCAGGTAAACCTCAATGTTgcacattaaaatattacaaataaatcagaaatgtacAAAGTCACATAGACATAATGGGTCCTGTTTTCTGCTTGGCACTGATTGGGGAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058266 lncRNA downstream 788 37267210 ~ 37271230 (-) False XLOC_028950
TCONS_00056012 lncRNA downstream 99713 36764181 ~ 37172305 (-) True XLOC_028945
TCONS_00057380 lncRNA downstream 501361 36764140 ~ 36770657 (-) False XLOC_028945
TCONS_00058265 lncRNA downstream 686379 36585319 ~ 36585639 (-) True XLOC_028944
TCONS_00057379 lncRNA downstream 688650 36581203 ~ 36583368 (-) True XLOC_028943
TCONS_00057383 lncRNA upstream 55484 37328527 ~ 37333793 (-) True XLOC_028952
TCONS_00057384 lncRNA upstream 106094 37379137 ~ 37380416 (-) False XLOC_028953
TCONS_00058267 lncRNA upstream 106127 37379170 ~ 37380395 (-) True XLOC_028953
TCONS_00058268 lncRNA upstream 333366 37606409 ~ 37607499 (-) True XLOC_028956
TCONS_00058269 lncRNA upstream 422578 37695621 ~ 37696534 (-) True XLOC_028957
TCONS_00056018 mRNA downstream 35524 37230587 ~ 37236494 (-) False XLOC_028949
TCONS_00056019 mRNA downstream 36383 37230842 ~ 37235635 (-) True XLOC_028949
TCONS_00056017 mRNA downstream 478360 36792274 ~ 36793658 (-) True XLOC_028948
TCONS_00056016 mRNA downstream 479874 36791732 ~ 36792144 (-) True XLOC_028947
TCONS_00056014 mRNA downstream 480623 36789137 ~ 36791395 (-) False XLOC_028946
TCONS_00056023 mRNA upstream 203324 37476367 ~ 37479399 (-) False XLOC_028954
TCONS_00056024 mRNA upstream 204621 37477664 ~ 37479395 (-) True XLOC_028954
TCONS_00056025 mRNA upstream 304484 37577527 ~ 37587110 (-) True XLOC_028955
TCONS_00056026 mRNA upstream 403120 37676163 ~ 37696010 (-) False XLOC_028957
TCONS_00056027 mRNA upstream 403283 37676326 ~ 37693537 (-) False XLOC_028957
TCONS_00056020 other downstream 788 37267210 ~ 37271230 (-) False XLOC_028950
TCONS_00056022 other downstream 976 37268662 ~ 37271042 (-) True XLOC_028950
TCONS_00056021 other downstream 1428 37268567 ~ 37270590 (-) False XLOC_028950
TCONS_00056015 other downstream 481053 36790179 ~ 36790965 (-) True XLOC_028946
TCONS_00056013 other downstream 482311 36789137 ~ 36789707 (-) False XLOC_028946
TCONS_00056030 other upstream 457076 37730119 ~ 37730282 (-) True XLOC_028959
TCONS_00056031 other upstream 458386 37731429 ~ 37731577 (-) True XLOC_028960
TCONS_00056033 other upstream 748431 38021474 ~ 38021637 (-) True XLOC_028963
TCONS_00056034 other upstream 749985 38023028 ~ 38023176 (-) True XLOC_028964
TCONS_00056036 other upstream 762899 38035942 ~ 38036905 (-) True XLOC_028966

Expression Profile

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