RNA id: TCONS_00056047


Basic Information

Item Value
RNA id TCONS_00056047
length 1825
RNA type unprocessed_pseudogene
GC content 0.43
exon number 6
gene id XLOC_028976
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 38335535 ~ 38539463 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tgtgagatcagaatcatgtgtgtccagctctgtgtctctgaagagtgactgctCTAAAGATTATCCACCAGTGttcagagagaaaacaccattATCTGCTCAAAAtgtgagatcaggatcatgtgtgtccagctctaagtctctgaagagtgactgcgCTAAAGGTTATCCACCAGACCTCAGAgaggaaacaccatcatctgcacaaagtgttgaatatgagtcagcagattcaggagacgagactcacaggagacacaagagcttcacagacaatctccagtcTATCTTCCACaatcttgagagtaAAATTATCAGATTACTGAAGAATAAACTGGAGAAAtttaagaaaatcttacaagaagaaaacagacaagagtttATAAAGGAGTTTATTGAGAACAGAAGCattatcacagaagcagctcttgatctcacactcttcttcctgagagagatgaagcaagatcaagctgctgatactctccagggtgagctgttcttcattaatcagcttaaatgtagcctgaagaagaaatatcaaagtgtgtttgaaggaattgctcagcaaggagactccactcttctgaataacatctacacagatctctatatcactcagggtgtgagtgaacaggtcaacactgaacatgagatcagacagattgaagctgcttccagacgtcatcagtcactagagatacaggttaaatgcaaacatttgtttgaagcagctgaacaagacgagcagatcagaactgtcctgacaaaaggagttgctggcatcgggaaatcagtctctgtgcaaaagtttgttctggattgggctgaagggaaagaaaatcaagacatcagcttcatatttcctcttccattcagagagatgaacttaaaggagaaagaaagacaaagtttaaaagacctcataactcagtttttcccagagactaaaggactgaatcttacaagaagcacacgattcaaagtcctgttcatccttgatggattggatgaatgtcgtcttcctctgaactttgctggtaatgagacgtgtggtgatgtatcttcagcagtctctctggatgttctcctgacgaacctcatcaagggaaatctgcttccttctgctctcatctggatcaccagcagaccagcagctgccagtaagattcctgctgactgtatcgaccggctgacagagatacgaggattcaatgatgcccaaaaggaggagtacttcagaaagagactcacagatcagaatcaggccagagaaatcattgatcacattaaacagtcaaagagtctctttattatgtgccacatcccagtcttctgctgtatttcagccactgttctccagaacatactgaaactgaaacacagggctcatgctgaaacactgcaggaatctcccaagactctgacacagatgtacacacactttctccgctttcagatccagcagagcagaagaaagtatgatggagaaaacacagcagatgtctcctgtctcctggccttccagcagctggaaagaaacaatgtgatcttctatgagagcgatctgaaagactgtggcattgacgtctataaggcatcggtgtacttAGGCaagtgtacccagatctttaaggagggACGGGAATCAATTagctgtaatctcactgttcagtgctgtgagagtttgtcttcagctctacaatcctcaaactgtgtgctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagaagctctctgatggactgaagaaaCCAGAGTGTAAACTGGAGATACTGAGATAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000160537

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057388 lncRNA downstream 175688 38158339 ~ 38159864 (-) False XLOC_028968
TCONS_00057387 lncRNA downstream 175688 38158339 ~ 38159864 (-) True XLOC_028968
TCONS_00057386 lncRNA downstream 187625 38146996 ~ 38147927 (-) False XLOC_028967
TCONS_00057385 lncRNA downstream 187625 38146996 ~ 38147927 (-) True XLOC_028967
TCONS_00058270 lncRNA downstream 552077 37779856 ~ 37783475 (-) True XLOC_028962
TCONS_00056053 lncRNA upstream 217344 38564564 ~ 38573606 (-) True XLOC_028979
TCONS_00058271 lncRNA upstream 566313 38913533 ~ 38916444 (-) True XLOC_028983
TCONS_00056064 lncRNA upstream 815894 39163114 ~ 39165255 (-) False XLOC_028985
TCONS_00058272 lncRNA upstream 917759 39264979 ~ 39268051 (-) True XLOC_028986
TCONS_00058273 lncRNA upstream 962565 39309785 ~ 39310683 (-) True XLOC_028987
TCONS_00056045 mRNA downstream 19657 38287350 ~ 38315895 (-) True XLOC_028975
TCONS_00056043 mRNA downstream 26792 38265870 ~ 38308760 (-) False XLOC_028975
TCONS_00056044 mRNA downstream 53643 38267281 ~ 38281909 (-) False XLOC_028975
TCONS_00056042 mRNA downstream 75554 38254699 ~ 38259998 (-) True XLOC_028974
TCONS_00056035 mRNA downstream 301752 38032613 ~ 38033800 (-) True XLOC_028965
TCONS_00056048 mRNA upstream 63470 38410690 ~ 38421217 (-) True XLOC_028977
TCONS_00056049 mRNA upstream 128357 38475577 ~ 38476901 (-) True XLOC_028978
TCONS_00056050 mRNA upstream 155892 38503112 ~ 38507880 (-) False XLOC_028976
TCONS_00056051 mRNA upstream 158725 38505945 ~ 38539463 (-) False XLOC_028976
TCONS_00056052 mRNA upstream 163472 38510692 ~ 38519671 (-) True XLOC_028976
TCONS_00056041 other downstream 97848 38237604 ~ 38237704 (-) True XLOC_028973
TCONS_00056040 other downstream 98362 38237117 ~ 38237190 (-) True XLOC_028972
TCONS_00056039 other downstream 101286 38234160 ~ 38234266 (-) True XLOC_028971
TCONS_00056038 other downstream 101813 38233633 ~ 38233739 (-) True XLOC_028970
TCONS_00056037 other downstream 103400 38232079 ~ 38232152 (-) True XLOC_028969
TCONS_00056067 other upstream 1010446 39357666 ~ 39357785 (-) True XLOC_028988
TCONS_00056068 other upstream 1016818 39364038 ~ 39364215 (-) True XLOC_028989
TCONS_00056071 other upstream 1104415 39451635 ~ 39469709 (-) True XLOC_028992
TCONS_00056095 other upstream 2550637 40897857 ~ 40897963 (-) True XLOC_029011
TCONS_00056096 other upstream 2551164 40898384 ~ 40898490 (-) True XLOC_029012

Expression Profile

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