RNA id: TCONS_00056052


Basic Information

Item Value
RNA id TCONS_00056052
length 3024
RNA type mRNA
GC content 0.43
exon number 3
gene id XLOC_028976
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 38335535 ~ 38539463 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtAGTTTTTGGACGTACAACTGTAtgttaatgaatgttttattcaaacagtgatcttctcttttcttcaattatagaatcttgagagcaaaatgttcagatttctgaagaatcaatTGGAAAACTTTAGGAAAATCTTACAACACAAAAACAGACAAGAGTTTATAAAGGAGTTTAATGAGAACAGAAGTGgaatcacagaagcagctcttgatctcacactctttttcctgagagagatgaagcaagataAAGCTGCTGACACTCTTGAGGgcgagctgttcttcattaatcactttaaatgtagcctgaagaagaaatatcaaagtgtgtttgaaggaattgctcagcaaggagcctccacacttctgaataacatctacacagatgtctacatcactcagggtgcgagtgaacaggtcaacactgaacatgagatcagacagattgaagctgcttccagacgtcatcagtcactagagatacaggttaaatgcaaacatttgtttaaagcagctgaacaagacgagcagatcagaactgtcctgacaaaaggagttgctggcatcgggaaatcagtctctgtgcaaaagtttgttctggattgggctgaaggaaaagaaaatcaagacatcagcttcatatttcctcttccattcagagagatgaacttaaaggagaaagaaagacaaagtttaaaagacctcataactcagtttttcccagagactaaaggactgaaccttacacgaagcacacgattcaaagtcctgttcatccttgatggattggatgaatgtcgtcttcctctaaactttgctggtaatgagacgtgtcgtgatgtatcttcagcagtctctctggatgtcctcctgacgaacctcatcaagggaaatctgcttccttctgctctcatctggatcaccagcagaccagcagctgccagtaagattcctgctgactgtatcgaccggctgacagagatacgaggattcaatgatgcccaaaaggaggagtacttcagaaagagactcacagatcagaatcaggccacagaaatcattgatcacattaaacagtcaaagagtctctttattatgtgccacatcccagtcttctgctggatttcagccactgtcctccagaacatactgaaactgaaacacagggctcatgctgaaacactgcaggaatcttccaagactctgacacagatgtacacacactttctccgctttcagatccagcagagcagaagaaagtatgatggagaaaacacagcagatgtctcctgggatccaaagctcatcctttcactggggaaactggccttccagcagctggaaagaaacaatgtgatcttctatgagagcgatctgaaagactgtggcattgacgtctataaggcatcggtgtactcaggcatgtgtacccagatctttaaggaggagacgggaatcattcttggtaccatgtactgctttcttcacttgagcattcaggagttcattgcagccctttatcaacatctgattctaGACAGAGACAAGAAGCATGGATTGTTTTTACAGATAAGCAAAAATAAAGTCATGACAGATTTcctgaagactgcagtggacaaggctctggaaagtgagaatggacatctggatctttaccttcgcttccttctcggtctgtctCTCCAGTGTAATCAccaactcttacgaggcctgttgacacagcaggatgacagagaccagagcaaagaggaaataattgcctacatcaagcagaaacttgaagggaatctgtctccagagagatccatcaatctgttctactgtctgaatgaactgaacgaccaaactctgctgaaagagattcagtctcacctcagtagaggacgtctgtcatctgctcgcctttcacctgcccagtggtctgctctggtctttgtgttgttgacctcagaggaggagctggaggagtttgagcttcagaaattccagagatcagacgagtgtctcatcagactatcagcagtcatcaaaacctccaaaagagctctgctacagtgcTGTAAACTTACTGTTCggtcctgtgagagtttgtcttcagttctacaatcctcaaactgtgtgctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagaagctctctgatggactgaagagtcaacactgtaaactagaaacactgaggtctgagtttaaacacctgattgattgattgattgattgattgattgattttttgttttgttacatcagacagatcacattaacagtgtgtttttagtaatgtgtgttcttctttctcagattgatGACGTGTAAACTCACTGCCGattcttgtgagagtttgtcttcagctctacaatcctcaaactgtgtgctgagagagctggacctgagtaacaatgacctgccggattcaggagtgaagcttctctctgatggactgaagagtcaacactgtacactggagacactgaggtctgagtttaaacacctgcttgattgattgattgattgattttttgttttgttttgactgatcacattaacagtgtggtttttagtaatgtgtgttcttctttctcagattggccacgtgtaatctcactgttcagtgttgtgagagtttgtcttcagctctaaaATCCTcgaactgtgtgctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagcttctctctgatggactgaagagtcaacactgtaaactggacacactgaggtaaatgattctccactctacaataactacagtcagacagtttcatattagagctcttcatgcttgaacatgttgactctgggtgatactaaaccccagataacaggaattatagtttatcagtaattgtgtttcacactgctcatactatacctgtagttaaccctcaggagtctgaggtgattttgggacccctgagatgttttgacatgccctgattCAGC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000187075

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057388 lncRNA downstream 350828 38158339 ~ 38159864 (-) False XLOC_028968
TCONS_00057387 lncRNA downstream 350828 38158339 ~ 38159864 (-) True XLOC_028968
TCONS_00057386 lncRNA downstream 362765 38146996 ~ 38147927 (-) False XLOC_028967
TCONS_00057385 lncRNA downstream 362765 38146996 ~ 38147927 (-) True XLOC_028967
TCONS_00058270 lncRNA downstream 727217 37779856 ~ 37783475 (-) True XLOC_028962
TCONS_00056053 lncRNA upstream 44893 38564564 ~ 38573606 (-) True XLOC_028979
TCONS_00058271 lncRNA upstream 393862 38913533 ~ 38916444 (-) True XLOC_028983
TCONS_00056064 lncRNA upstream 643443 39163114 ~ 39165255 (-) False XLOC_028985
TCONS_00058272 lncRNA upstream 745308 39264979 ~ 39268051 (-) True XLOC_028986
TCONS_00058273 lncRNA upstream 790114 39309785 ~ 39310683 (-) True XLOC_028987
TCONS_00056050 mRNA downstream 2812 38503112 ~ 38507880 (-) False XLOC_028976
TCONS_00056049 mRNA downstream 33791 38475577 ~ 38476901 (-) True XLOC_028978
TCONS_00056048 mRNA downstream 89475 38410690 ~ 38421217 (-) True XLOC_028977
TCONS_00056045 mRNA downstream 194797 38287350 ~ 38315895 (-) True XLOC_028975
TCONS_00056043 mRNA downstream 201932 38265870 ~ 38308760 (-) False XLOC_028975
TCONS_00056054 mRNA upstream 69882 38589553 ~ 38608436 (-) True XLOC_028980
TCONS_00056055 mRNA upstream 298523 38818194 ~ 38828508 (-) False XLOC_028981
TCONS_00056056 mRNA upstream 298766 38818437 ~ 38826790 (-) False XLOC_028981
TCONS_00056057 mRNA upstream 306770 38826441 ~ 38829098 (-) True XLOC_028981
TCONS_00056058 mRNA upstream 357096 38876767 ~ 38877924 (-) True XLOC_028982
TCONS_00056047 other downstream 163472 38335552 ~ 38347220 (-) False XLOC_028976
TCONS_00056041 other downstream 272988 38237604 ~ 38237704 (-) True XLOC_028973
TCONS_00056040 other downstream 273502 38237117 ~ 38237190 (-) True XLOC_028972
TCONS_00056039 other downstream 276426 38234160 ~ 38234266 (-) True XLOC_028971
TCONS_00056038 other downstream 276953 38233633 ~ 38233739 (-) True XLOC_028970
TCONS_00056067 other upstream 837995 39357666 ~ 39357785 (-) True XLOC_028988
TCONS_00056068 other upstream 844367 39364038 ~ 39364215 (-) True XLOC_028989
TCONS_00056071 other upstream 931964 39451635 ~ 39469709 (-) True XLOC_028992
TCONS_00056095 other upstream 2378186 40897857 ~ 40897963 (-) True XLOC_029011
TCONS_00056096 other upstream 2378713 40898384 ~ 40898490 (-) True XLOC_029012

Expression Profile

//