RNA id: TCONS_00005305


Basic Information

Item Value
RNA id TCONS_00005305
length 1639
RNA type mRNA
GC content 0.45
exon number 6
gene id XLOC_002866
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 32534814 ~ 32610776 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GATAAGGATAGGATCAGATCAAGACATGGTGTCAGACTTTGACCGTAGCCGCGAGCATGAGAGTGGGAAGCGCGACGCTGATCCCTCGGCCTCTCGCCGGCTCTTGTCCTCTTCTGGTTTAGACATGAAGATTGAGTTTGCTCCAGCTGATGTGCCTCTGGTTCGGAGGCTCCAGACAGCTTCCGTGCTGCAATGGGTCTTCTCATTCCTGGCTCTTGCGCCCTGCTGTATTGTCCTGTTCTTCATCCTGCTCTTCACTCGTTTCTGGCTCATCAGTGTGCTTTATGCCACCTGGTGGTACATCGACTGGGACACACCTTCACGAGGAGGGAGAAAAGTGCCATATCTCTGCAAACTGCGTGTGTGGGAGTACATGAGAGATTATTTCCCCATTAGGctgataaagacggctgacttGGACACTAGGAAGAACTATGTGATGGGTTTCCATCCTCATGGTATTCTCGTGGCTGGTGCTTTTACAAATTTCTGCACGGAGGCGACTGGATTTAGCAAACTCTTCCCTGGGATAAAGAGCAACCTTCTCATGCTGCCTCTCTGGTTCAGAGCCCCCTTCTTCAGAGATTACATCATGTCAGCAGGGCTGGTTCCATCAGACAAGGAGAGTGCCGGTTATCTGCTCCGGAGGAAGGGCGGAGGGAATGCGGTGGTCATTGCAGTCGGTGGAGCTCCTGAAGCTTTGGATGCACATCCTGGTGACTACACCGTTCACCTGGCCAATAAGAAAGGCTTTATTAAGCTTGCAATAGAGCACGGTGCAGATTTGGTTCCTATATATTCGTTTGGAGAGAACGAGGTGTTTGACCAGGTGCAGAATCCTCGTGGCACATGGCTGCGATACATTCAAGAGCGTCTGCAGCGCATCATGGGTGTTTCTCTTCCTCTCTTTCATGCGCGAGGAGTTTTCCAGTACACCTTCGGCCTGATGCCTTACAGAAAGCCCATCAACACTGTTGTGGGTAGGCCAATTCCAGTGGAGAAAAATGAGAAACCAACAGCAGAAGAATTGGACGTCTATCATCAGCGCTATATGGATGAACTGGCACGGCTGTTCGAGGACCACAAGGGAAATTATGGAGTACCTGAAGACACTCATCTGGTGTTCCAGTGAGATGATCACTTATGTTGACGatgagtttgtgtgtttgtacctTGTATTTCTTACTTTGTAGGAACCAAATGTCTTCACATATATAGCAATACCACTAcatttgaccttgtggggacatttgtttGGTTCTAATGTTCAAAATGGCTCATGAATCACGCTGAATTtaatatttagaaaatgtaaaaatgccgattgttttctgtgagggttgggtttaggggtagggggatagaatatacagtttgtTCAGTATAACAATCATTACATCTATGGGAAGTcctcataaagatagctgtacaagtttgtgcatgtgtgtgttgtttattgCTGACTTTAAAACCGTCATTATTTTGGTAGATATAACAACTGTTGAATGTACCATCAACATTTTATTTCCTGATAAATGACTGAATTACAGTTACAGTCATACTTTAGATACACTTCAACTTGTGGATATTGCAAAATGTTACTTTACAAGTAAATTAAAACCCACTTGCTTCAAGTTTA

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0006651 diacylglycerol biosynthetic process biological_process
GO:0001878 response to yeast biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups molecular_function
GO:0003846 2-acylglycerol O-acyltransferase activity molecular_function
GO:0008374 O-acyltransferase activity molecular_function

KEGG:

id description
ko00561 Glycerolipid metabolism
ko04975 Fat digestion and absorption

ZFIN:

id description
ZDB-GENE-041010-186 Predicted to enable 2-acylglycerol O-acyltransferase activity. Acts upstream of or within response to yeast. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Is expressed in intestinal bulb and yolk syncytial layer. Orthologous to several human genes including MOGAT2 (monoacylglycerol O-acyltransferase 2).

Ensembl:

ensembl_id ENSDART00000128888

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005771 lncRNA downstream 283968 32229939 ~ 32250846 (-) True XLOC_002863
TCONS_00006079 lncRNA downstream 284043 32216413 ~ 32250771 (-) False XLOC_002863
TCONS_00006080 lncRNA downstream 295086 32229939 ~ 32239728 (-) False XLOC_002863
TCONS_00006078 lncRNA downstream 450190 32077811 ~ 32084624 (-) True XLOC_002862
TCONS_00006077 lncRNA downstream 450693 32077811 ~ 32084121 (-) False XLOC_002862
TCONS_00006081 lncRNA upstream 25768 32584685 ~ 32591462 (-) True XLOC_002867
TCONS_00005772 lncRNA upstream 117893 32676810 ~ 32678245 (-) True XLOC_002870
TCONS_00006082 lncRNA upstream 220963 32779880 ~ 32780290 (-) True XLOC_002871
TCONS_00006083 lncRNA upstream 336080 32894997 ~ 32896944 (-) True XLOC_002875
TCONS_00006084 lncRNA upstream 599672 33158589 ~ 33164573 (-) True XLOC_002877
TCONS_00005304 mRNA downstream 10043 32502354 ~ 32524771 (-) True XLOC_002865
TCONS_00005303 mRNA downstream 10779 32501961 ~ 32524035 (-) False XLOC_002865
TCONS_00005301 mRNA downstream 40315 32265064 ~ 32494499 (-) False XLOC_002864
TCONS_00005300 mRNA downstream 40510 32264857 ~ 32494304 (-) False XLOC_002864
TCONS_00005302 mRNA downstream 69352 32383577 ~ 32465462 (-) True XLOC_002864
TCONS_00005310 mRNA upstream 54789 32613706 ~ 32639939 (-) False XLOC_002868
TCONS_00005311 mRNA upstream 54789 32613706 ~ 32639941 (-) True XLOC_002868
TCONS_00005312 mRNA upstream 98579 32657496 ~ 32660716 (-) False XLOC_002869
TCONS_00005313 mRNA upstream 98579 32657496 ~ 32660737 (-) False XLOC_002869
TCONS_00005314 mRNA upstream 98579 32657496 ~ 32663759 (-) True XLOC_002869
TCONS_00005293 other downstream 1430060 31021356 ~ 31104754 (-) True XLOC_002857
TCONS_00005286 other downstream 2003557 30531143 ~ 30531257 (-) True XLOC_002854
TCONS_00005276 other downstream 2795706 29736186 ~ 29739108 (-) True XLOC_002847
TCONS_00005273 other downstream 2826632 29708068 ~ 29708182 (-) True XLOC_002845
TCONS_00005263 other downstream 3611181 28923517 ~ 28923633 (-) True XLOC_002838
TCONS_00005309 other upstream 8707 32567624 ~ 32610694 (-) True XLOC_002866
TCONS_00005329 other upstream 817901 33376818 ~ 33376941 (-) True XLOC_002883
TCONS_00005330 other upstream 818084 33377001 ~ 33377086 (-) True XLOC_002884
TCONS_00005331 other upstream 818213 33377130 ~ 33377214 (-) True XLOC_002885
TCONS_00005343 other upstream 1473366 34032283 ~ 34033421 (-) True XLOC_002893

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000304_15715861_15722546.mRNA True 1445 mRNA 0.44 6 CI01000304 15715424 ~ 15722546 (-)