RNA id: TCONS_00056053


Basic Information

Item Value
RNA id TCONS_00056053
length 833
lncRNA type lincRNA
GC content 0.36
exon number 2
gene id XLOC_028979
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 38564564 ~ 38573606 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCAGtgtattgtgctccaaaatctctgtcTCAGCTCAACTTTTCAGCAGTAATAGTGCCATCACATCTGATATTTAGGAAAATCATGCAATGTAAATTTGGCATTAGGCGACAAGCAAACCAGATGTCAGACATAATATAACAGGATATTTCTATTGTCAGGATGATCAGAAATTTAACTACAGTCTTCTAGACTCCTCTaatgaagaacacacacacacacacacacacatacataaagatTGATTATCAACTTATAGGATGTCCTGCAATCTAATAGGCATCTTGACAGAATGGCACAATAAACATCTTTTTACTGGCAGCTAATACATAGAAAGTCTTTCTCATTTAATATAGAATAGAAGACAGCAGAATTCACATGTACTGACAGCTGTTTAAGTAACATCAAACGTCCAGTTCCACAtgagaggtctccatgacctctagAATAGACCTGAAGATTTTAAAGAAGCAAATAACTTGGCATACAGATAAAGCAATATCATTCATATCACACATATGATTCTAGTTTTACTCTAAAGAGGGAAGACAAGTCATTATATAATCTATGCACCTGAACAATTCTCCATTGCAAAGGTATTAATAATCATATCACAGAAAGGATATTTTCTAATCCTGGTGTGGTCATCATCCAGATACCCACTCCTTCGATGAGCACAGACGACCCTTTAACCTTTAATCATATCATTATCACTTATTATCATGTTTTTCATGCATGAAAGGGCTTTAGCAATCAACCTATAAAGTGTTGATTATTGTGAAACTGCACAGAAATAGAGAAGTAGTATTGCAAAGAACAGCAAATCGCGTGC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000157923

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057388 lncRNA downstream 404700 38158339 ~ 38159864 (-) False XLOC_028968
TCONS_00057387 lncRNA downstream 404700 38158339 ~ 38159864 (-) True XLOC_028968
TCONS_00057386 lncRNA downstream 416637 38146996 ~ 38147927 (-) False XLOC_028967
TCONS_00057385 lncRNA downstream 416637 38146996 ~ 38147927 (-) True XLOC_028967
TCONS_00058270 lncRNA downstream 781089 37779856 ~ 37783475 (-) True XLOC_028962
TCONS_00058271 lncRNA upstream 339927 38913533 ~ 38916444 (-) True XLOC_028983
TCONS_00056064 lncRNA upstream 589508 39163114 ~ 39165255 (-) False XLOC_028985
TCONS_00058272 lncRNA upstream 691373 39264979 ~ 39268051 (-) True XLOC_028986
TCONS_00058273 lncRNA upstream 736179 39309785 ~ 39310683 (-) True XLOC_028987
TCONS_00057389 lncRNA upstream 1070018 39643624 ~ 39702186 (-) False XLOC_028993
TCONS_00056051 mRNA downstream 25101 38505945 ~ 38539463 (-) False XLOC_028976
TCONS_00056046 mRNA downstream 44893 38335535 ~ 38519671 (-) False XLOC_028976
TCONS_00056052 mRNA downstream 44893 38510692 ~ 38519671 (-) True XLOC_028976
TCONS_00056050 mRNA downstream 56684 38503112 ~ 38507880 (-) False XLOC_028976
TCONS_00056049 mRNA downstream 87663 38475577 ~ 38476901 (-) True XLOC_028978
TCONS_00056054 mRNA upstream 15947 38589553 ~ 38608436 (-) True XLOC_028980
TCONS_00056055 mRNA upstream 244588 38818194 ~ 38828508 (-) False XLOC_028981
TCONS_00056056 mRNA upstream 244831 38818437 ~ 38826790 (-) False XLOC_028981
TCONS_00056057 mRNA upstream 252835 38826441 ~ 38829098 (-) True XLOC_028981
TCONS_00056058 mRNA upstream 303161 38876767 ~ 38877924 (-) True XLOC_028982
TCONS_00056047 other downstream 217344 38335552 ~ 38347220 (-) False XLOC_028976
TCONS_00056041 other downstream 326860 38237604 ~ 38237704 (-) True XLOC_028973
TCONS_00056040 other downstream 327374 38237117 ~ 38237190 (-) True XLOC_028972
TCONS_00056039 other downstream 330298 38234160 ~ 38234266 (-) True XLOC_028971
TCONS_00056038 other downstream 330825 38233633 ~ 38233739 (-) True XLOC_028970
TCONS_00056067 other upstream 784060 39357666 ~ 39357785 (-) True XLOC_028988
TCONS_00056068 other upstream 790432 39364038 ~ 39364215 (-) True XLOC_028989
TCONS_00056071 other upstream 878029 39451635 ~ 39469709 (-) True XLOC_028992
TCONS_00056095 other upstream 2324251 40897857 ~ 40897963 (-) True XLOC_029011
TCONS_00056096 other upstream 2324778 40898384 ~ 40898490 (-) True XLOC_029012

Expression Profile

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