RNA id: TCONS_00056060


Basic Information

Item Value
RNA id TCONS_00056060
length 1077
RNA type mRNA
GC content 0.41
exon number 2
gene id XLOC_028984
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 39105046 ~ 39111612 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atggcgtttattaaagaggagagtgaagatgtgaagattgaagaaacattcacagtcaaacaggaagatctgcaggaacaaacagacCTGATGTTGCTGAAAGAAAAGACTCATCAACagaatgaaatggaagagaaacaGCAAGACATGACGACTGATGAAAAACCTACACTGACGAAAAAGACTTTGTCAcgtggaagacctcggaaatccaaacctaggtgtaatttcagctgtaaacaatgtggaaaaagtttcAGTCAGAAGCCAAAGCTTGATGTTCACATAAGAGATCACACTAGGGAGAAAGCTTATACttgcaaacagtgtggaaagagcttctaTAATACAAGAAACCtaacagtgcacatgagaattcacactggagaaaggccgtacacatgccaacagtgtgggaaAAGCTTCCATAAAACAGGAAACTTAACAGTGCActtgagaattcacactggagagaggccatacacatgccaacagtgtgggaaAAGCTTTCAAACTACAGGAAActtaacagtgcacatgagaattcacactggggagaagccttactcttgccctcagtgtggaaaaagTTATAGTCAAAATAGCAaccttgaagtccacatgagaactcacaatgGAGGAAGAACTTTTGTTTGCACACAGTGTGGTAAAagatttgttaaaaaacaaaatcttgacctccacatgaggattcacactggagagaaaccttacacatgcacagagtgtggtaaaagtttcccatataaaagcacactcaaacaccacatgatagttcacaccggagagaagccgtttgcatgtgcgcagtgtggaaagagcttcacatgtAATGCTAACCTCAggaaccacatgaatggtcacactggaaccatagtgttcacatgtgatctgtgtggaaagagtctcacacacAAATACTCCATAAAGAaccacatgaagactcactcaggAGAGCGTTTTATATGCAttgagtgtggaaagggctttaaacataaaagaagcctcagCAATCACATggagcttcacaatggagagcagagtcctcaaaattaa

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110913-23 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDART00000185041

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058271 lncRNA downstream 190037 38913533 ~ 38916444 (-) True XLOC_028983
TCONS_00056053 lncRNA downstream 532875 38564564 ~ 38573606 (-) True XLOC_028979
TCONS_00057388 lncRNA downstream 946617 38158339 ~ 38159864 (-) False XLOC_028968
TCONS_00057387 lncRNA downstream 946617 38158339 ~ 38159864 (-) True XLOC_028968
TCONS_00057385 lncRNA downstream 958554 38146996 ~ 38147927 (-) True XLOC_028967
TCONS_00056064 lncRNA upstream 52180 39163114 ~ 39165255 (-) False XLOC_028985
TCONS_00058272 lncRNA upstream 154045 39264979 ~ 39268051 (-) True XLOC_028986
TCONS_00058273 lncRNA upstream 198851 39309785 ~ 39310683 (-) True XLOC_028987
TCONS_00057389 lncRNA upstream 532690 39643624 ~ 39702186 (-) False XLOC_028993
TCONS_00056074 lncRNA upstream 532969 39643903 ~ 39650274 (-) True XLOC_028993
TCONS_00056058 mRNA downstream 228557 38876767 ~ 38877924 (-) True XLOC_028982
TCONS_00056057 mRNA downstream 277383 38826441 ~ 38829098 (-) True XLOC_028981
TCONS_00056055 mRNA downstream 277973 38818194 ~ 38828508 (-) False XLOC_028981
TCONS_00056056 mRNA downstream 279691 38818437 ~ 38826790 (-) False XLOC_028981
TCONS_00056054 mRNA downstream 498045 38589553 ~ 38608436 (-) True XLOC_028980
TCONS_00056061 mRNA upstream 47071 39158005 ~ 39171837 (-) False XLOC_028985
TCONS_00056062 mRNA upstream 51563 39162497 ~ 39186893 (-) False XLOC_028985
TCONS_00056063 mRNA upstream 51565 39162499 ~ 39186901 (-) False XLOC_028985
TCONS_00056065 mRNA upstream 66435 39177369 ~ 39186898 (-) True XLOC_028985
TCONS_00056066 mRNA upstream 133467 39244401 ~ 39265279 (-) False XLOC_028986
TCONS_00056047 other downstream 759261 38335552 ~ 38347220 (-) False XLOC_028976
TCONS_00056041 other downstream 868777 38237604 ~ 38237704 (-) True XLOC_028973
TCONS_00056040 other downstream 869291 38237117 ~ 38237190 (-) True XLOC_028972
TCONS_00056039 other downstream 872215 38234160 ~ 38234266 (-) True XLOC_028971
TCONS_00056038 other downstream 872742 38233633 ~ 38233739 (-) True XLOC_028970
TCONS_00056067 other upstream 246732 39357666 ~ 39357785 (-) True XLOC_028988
TCONS_00056068 other upstream 253104 39364038 ~ 39364215 (-) True XLOC_028989
TCONS_00056071 other upstream 340701 39451635 ~ 39469709 (-) True XLOC_028992
TCONS_00056095 other upstream 1786923 40897857 ~ 40897963 (-) True XLOC_029011
TCONS_00056096 other upstream 1787450 40898384 ~ 40898490 (-) True XLOC_029012

Expression Profile

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