RNA id: TCONS_00056063


Basic Information

Item Value
RNA id TCONS_00056063
length 4041
RNA type mRNA
GC content 0.47
exon number 13
gene id XLOC_028985
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 39158005 ~ 39186901 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

agtgaagtgaaagagtgaaagagctcagattgtgttcctgctgcacaagagcgtctgtacttctgcatgtggtggtcagcggctgattgtttcctcaaagctctgctaatgtctgcattggtgttttagctgcagtatggcagaggagcgagtaaaggactctctctcagagaaacacagtgtgagatcaggatcatgtgtgtccagcgctgtgtctctgaagagtgaccggtcAATGGGTCCTCCACCAAACCTAAGTGAGAAATCACCATCACCTGCCCAAAGtgtgtatagagatgatcagactggagacctgcagcaggattcactccaaccagaacatgatgaacttcagagagtcaaagagcagcacaaaaccagcatgaagaacaagtatgagagattatttgagggagTCAACCATGGAGAcactcaaaccctcctgaacaggatctacacacagctctacatcatagaaggagagagtgaaggagtgaatgaagaacatgaggttttacagatggagaaaagagccagaacaaaaccctcacaacacactccagtctactgcaatgacatctttaaagcctcagctggagcaggacatgaggagaagatcaagcaggagaaagcccagatcaagactgttctcactaaaggcatcgctggaatcgggaaaaccgtctctgtgcagaagttcattctggactgggccgagggaaaagccaaccaggatgtagatttcatgtttgtgcttccatttcgagagctgaacttgatcagagatcatcagtacagtcttcacagacttctgctggactttcatcctgaacttgaagatctggagcccaagatttatgagcagtgtagagttgtgttcatctttgatggtctggatgaaagcagaatcacgctgaacttttcagatgaggagaaagtttgtgctgtgactgaatcttcatcagatgagaagaaagtttgtgctgtgactgaatcttcatcagtggctgtgttgatgtggagcctcctgaaaggagatctgcttccctctgctctcatctggatcacctccagaccagcagcagcccatcagatcccctccagatacatcaaccgtctgacagaaattcagggattcactgagcctcagaaggaggaatatttcaggaagagaatcagcgacgagcatcaagacagcagaatcatctcccacatcagaagagcaagaagcctccagatcatgtgccacatacccgtcttctgctggatctcctccactgtgcttcagaagctcctggaagaagatgtgagtgcagaaatccctcaaactctgactgagatgtacatccacttcctgctgattcagatcaacatgaggaagcagaagtatgaagagagagatccagagaaactccggcaggccaacagaggagtgatcctcaaacttgctgaagtggctttcagacagctgatgaagggcaatgtgatgttctatgaggaggacctgattgagagtggcatagacgtcactgatgcctcggtgtattctgggatctgcactgagatcttcaaggaggaatctgtgattcatcagaggaaagtctacagcttcatccatctcagctttcaggagtttctggctgctttctttgtgttttgctgccatttaacagagaacagagaaccgcTGAGGGGGATTTATGACAGTGAATATTCATATGATCAATATCTACAGTCCAGCTCTGAGAAGTCTCTGTATAATCTGCTCAGTTCAGCAGTAGATAAAGCTGTCaggagtagtaatggtcatctggatctgttcctgcggttcctgctgggcgtctcactggagtccaatcagagactcttccaggatctgctgacacacacagaggagagctCAGAGAACATCAGAGAAatcacacagtacattaaagacaAGATCAAGACAGATGATGAACTCTCAGctgaaagatccatcaatctgttcctctgtctgctggaggtgaaagatcagactctggccagagagattcaggagtttgtgaaatcagacaaacactcagaggaggaactctctcctgctcactgctcaacaatctcctacatgattgagatgtcagaggagccgctggatgagttagactttaataaattcaacacatcagctgagggaagacggagactgacagcagctgtgagaaactgcagaagagctctactacagcgctgtaatctcactgttcagtgctgtgagagtttgtcttcagctctacaatcctcaaactgtgtgctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagcttctctctgatggactgaagagtcaacactgtaaactggacacactgaggctacaggactgtaaactcactgttgagtgctgtgagagtttgtcttcagctctacaatcctcaaactgtgtgctgagagagctggacctgagtatcaatgacctgcaggattcaggagtgaagcttctctctgatggactgaagagtcaacactgtaaactggacacactgagactgGCCATGTGTAAtcttactgttcagtgctgtaagagtttgtcttcagctctacaatcctcaaactgtgtgctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagcttctctttGATGGACTAAAGAGTCAatactgtaaactggagacactgagactgGTCAcatgtaatctcactgttcagtgctgtgagagtttgtcttcagctctacaatcctcaaactgtgtgctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagcttctctttGATGGACTAAAGAGTCAatactgtaaactggagacactgagactgGTCAcatgtaatctcactgttcagtgctgtgagagtttgtcttcagctctacaatcctcaaactgtgtgctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagcttctctctgatggactgaagagtcaacactgtaaactggacacactgagattgtctggctgtatggtgacagaggaaggctgtggttttctgtcttcagctctgacttcaaacccctcacacctgagagagctggatctgagctacaatcatccaggagattcaggagtcaagctgctctctgaacaactggaggatccaaactacacactggacaaactcaatctggatcatggaggacacacgaggattacagcaggaccacgcaaatatgtctgtttcctcactctggatccaaacacagcacacactcaactcattctgtctgaggagaacagagaggtgaagagtgtggaagagaatcagccgtatcctgatcatccagacagatttgattatcctcaggtgttgtgcagagagagtgtgtgtggacgctgttactgggagattgactggagtggagatgttgGTGTTTGTATATccgtgtcatataagagcatcaggaggaagggaggaggtgtTGAGTGTGCGTTTGGATATAATgttcagtcctggagtttgttctgctcttcCTCCAATTTCTCATTCagtcacaataacacacacactgatctcccagtgaagccgctcagcagtagaataggagtgtttgtggattacagtgcaggatctctgatcttctacaacatctatagagacacaatgagcctcatccactcagtccagaccacattcactgagccgctctgccctgggtttgggttttatcctggatcatcagtgaaactgagctgaagactgacgagagatttacccagaatcctctgcaggagcagtcagcagcagtgtgtgcgtgcgtgcgtgtgtgtgtgtgtgcatgtttattactgcatgtgtgtgagagagagagagagagagagtgtgtgtgcatgttcactgctgtttgtgtgcatgtgttgacTACAGtgtgactgtgtgtttgtgtgtgtgtgagagagaga

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070424-160 Predicted to be involved in intracellular signal transduction.

Ensembl:

ensembl_id ENSDART00000133901

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058271 lncRNA downstream 246055 38913533 ~ 38916444 (-) True XLOC_028983
TCONS_00056053 lncRNA downstream 588893 38564564 ~ 38573606 (-) True XLOC_028979
TCONS_00057388 lncRNA downstream 1002635 38158339 ~ 38159864 (-) False XLOC_028968
TCONS_00057387 lncRNA downstream 1002635 38158339 ~ 38159864 (-) True XLOC_028968
TCONS_00057385 lncRNA downstream 1014572 38146996 ~ 38147927 (-) True XLOC_028967
TCONS_00058272 lncRNA upstream 78078 39264979 ~ 39268051 (-) True XLOC_028986
TCONS_00058273 lncRNA upstream 122884 39309785 ~ 39310683 (-) True XLOC_028987
TCONS_00057389 lncRNA upstream 456723 39643624 ~ 39702186 (-) False XLOC_028993
TCONS_00056074 lncRNA upstream 457002 39643903 ~ 39650274 (-) True XLOC_028993
TCONS_00057390 lncRNA upstream 525877 39712778 ~ 39713950 (-) True XLOC_028994
TCONS_00056059 mRNA downstream 50887 39105046 ~ 39111612 (-) False XLOC_028984
TCONS_00056060 mRNA downstream 51565 39106481 ~ 39110934 (-) True XLOC_028984
TCONS_00056058 mRNA downstream 284575 38876767 ~ 38877924 (-) True XLOC_028982
TCONS_00056057 mRNA downstream 333401 38826441 ~ 38829098 (-) True XLOC_028981
TCONS_00056055 mRNA downstream 333991 38818194 ~ 38828508 (-) False XLOC_028981
TCONS_00056066 mRNA upstream 57500 39244401 ~ 39265279 (-) False XLOC_028986
TCONS_00056069 mRNA upstream 185874 39372775 ~ 39479644 (-) False XLOC_028990
TCONS_00056070 mRNA upstream 241701 39428602 ~ 39448829 (-) True XLOC_028991
TCONS_00056072 mRNA upstream 287825 39474726 ~ 39487825 (-) False XLOC_028990
TCONS_00056073 mRNA upstream 291967 39478868 ~ 39484284 (-) True XLOC_028990
TCONS_00056047 other downstream 815279 38335552 ~ 38347220 (-) False XLOC_028976
TCONS_00056041 other downstream 924795 38237604 ~ 38237704 (-) True XLOC_028973
TCONS_00056040 other downstream 925309 38237117 ~ 38237190 (-) True XLOC_028972
TCONS_00056039 other downstream 928233 38234160 ~ 38234266 (-) True XLOC_028971
TCONS_00056038 other downstream 928760 38233633 ~ 38233739 (-) True XLOC_028970
TCONS_00056067 other upstream 170765 39357666 ~ 39357785 (-) True XLOC_028988
TCONS_00056068 other upstream 177137 39364038 ~ 39364215 (-) True XLOC_028989
TCONS_00056071 other upstream 264734 39451635 ~ 39469709 (-) True XLOC_028992
TCONS_00056095 other upstream 1710956 40897857 ~ 40897963 (-) True XLOC_029011
TCONS_00056096 other upstream 1711483 40898384 ~ 40898490 (-) True XLOC_029012

Expression Profile

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