RNA id: TCONS_00056065


Basic Information

Item Value
RNA id TCONS_00056065
length 2425
RNA type mRNA
GC content 0.45
exon number 3
gene id XLOC_028985
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 39158005 ~ 39186901 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gaagtgaaagagtgaaagagctcagattgtgttcctgctgcacaagagcgtctgtacttctgcatctgcagtatggcagaggagcgagtaaaggactctctctcagagaaacacagtgtgagatcaggatcatgtgtgtccagcgctgtgtctctgaagagtgaccggtcAATGGGTCCTCCACCAAACCTAAGTGAGAAATCACCATCACCTGCCCAAAGGTATTTAGTGTTGTACATTATTGCCCACACTTGAACTGTATTTCAGTATTCATCAGgacatttttattatacttaatatGTTATACAGAGTCTCTTTAATAAATTGTGTTCTATAATGTTGGCTATCTTGGATGTCTCCCTTTTTTACATAATTTCCGAGCCATAAGGTATAACCATGGGGTCTACTCATTGattgtttgtgttgttgttgttcctgcagtgtgtatagagatgatcagactggagacctgcagcaggattcactccaaccagaacatgatgaacttcagagagtcaaagagcagcacaaaaccagcatgaagaacaagtatgagagattatttgagggagTCAACCATGGAGAcactcaaaccctcctgaacaggatctacacacagctctacatcatagaaggagagagtgaaggagtgaatgaagaacatgaggttttacagatggagaaaagagccagaacaaaaccctcacaacacactccagtctactgcaatgacatctttaaagcctcagctggagcaggacatgaggagaagatcaagcaggagaaagcccagatcaagactgttctcactaaaggcatcgctggaatcgggaaaaccgtctctgtgcagaagttcattctggactgggccgagggaaaagccaaccaggatgtagatttcatgtttgtgcttccatttcgagagctgaacttgatcagagatcatcagtacagtcttcacagacttctgctggactttcatcctgaacttgaagatctggagcccaagatttatgagcagtgtagagttgtgttcatctttgatggtctggatgaaagcagaatcacgctgaacttttcagatgaggagaaagtttgtgctgtgactgaatcttcatcagatgagaagaaagtttgtgctgtgactgaatcttcatcagtggctgtgttgatgtggagcctcctgaaaggagatctgcttccctctgctctcatctggatcacctccagaccagcagcagcccatcagatcccctccagatacatcaaccgtctgacagaaattcagggattcactgagcctcagaaggaggaatatttcaggaagagaatcagcgacgagcatcaagacagcagaatcatctcccacatcagaagagcaagaagcctccagatcatgtgccacatacccgtcttctgctggatctcctccactgtgcttcagaagctcctggaagaagatgtgagtgcagaaatccctcaaactctgactgagatgtacatccacttcctgctgattcagatcaacatgaggaagcagaagtatgaagagagagatccagagaaactccggcaggccaacagaggagtgatcctcaaacttgctgaagtggctttcagacagctgatgaagggcaatgtgatgttctatgaggaggacctgattgagagtggcatagacgtcactgatgcctcggtgtattctgggatctgcactgagatcttcaaggaggaatctgtgattcatcagaggaaagtctacagcttcatccatctcagctttcaggagtttctggctgctttctttgtgttttgctgccatttaacagagaacagagaaccgcTGAGGGGGATTTATGACAGTGAATATTCATATGATCAATATCTACAGTCCAGCTCTGAGAAGTCTCTGTATAATCTGCTCAGTTCAGCAGTAGATAAAGCTGTCaggagtagtaatggtcatctggatctgttcctgcggttcctgctgggcgtctcactggagtccaatcagagactcttccaggatctgctgacacacacagaggagagctCAGAGAACATCAGAGAAatcacacagtacattaaagacaAGATCAAGACAGATGATGAACTCTCAGGTAAAAGACCCATCAGACTGTTTCAGAAGACGAAAAatctctcagctgaaagatccatcaatctgttcctctgtctgctggaggtgaaagatcagactctggccagagagattcaggagtttgtgaaatcagacaaacactcagaggaggaactctctcctgctcactgctcaacaatctcctacatgattgagatgtcagaggagccgctggatgagttagactttaataaattcaacacatcagctgagggaagacggagactgacagcagctgtgagaaactgcagaagagctctgtga

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070424-160 Predicted to be involved in intracellular signal transduction.

Ensembl:

ensembl_id ENSDART00000121804

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00056064 lncRNA downstream 12114 39163114 ~ 39165255 (-) False XLOC_028985
TCONS_00058271 lncRNA downstream 260925 38913533 ~ 38916444 (-) True XLOC_028983
TCONS_00056053 lncRNA downstream 603763 38564564 ~ 38573606 (-) True XLOC_028979
TCONS_00057388 lncRNA downstream 1017505 38158339 ~ 38159864 (-) False XLOC_028968
TCONS_00057387 lncRNA downstream 1017505 38158339 ~ 38159864 (-) True XLOC_028968
TCONS_00058272 lncRNA upstream 78081 39264979 ~ 39268051 (-) True XLOC_028986
TCONS_00058273 lncRNA upstream 122887 39309785 ~ 39310683 (-) True XLOC_028987
TCONS_00057389 lncRNA upstream 456726 39643624 ~ 39702186 (-) False XLOC_028993
TCONS_00056074 lncRNA upstream 457005 39643903 ~ 39650274 (-) True XLOC_028993
TCONS_00057390 lncRNA upstream 525880 39712778 ~ 39713950 (-) True XLOC_028994
TCONS_00056061 mRNA downstream 5532 39158005 ~ 39171837 (-) False XLOC_028985
TCONS_00056059 mRNA downstream 65757 39105046 ~ 39111612 (-) False XLOC_028984
TCONS_00056060 mRNA downstream 66435 39106481 ~ 39110934 (-) True XLOC_028984
TCONS_00056058 mRNA downstream 299445 38876767 ~ 38877924 (-) True XLOC_028982
TCONS_00056057 mRNA downstream 348271 38826441 ~ 38829098 (-) True XLOC_028981
TCONS_00056066 mRNA upstream 57503 39244401 ~ 39265279 (-) False XLOC_028986
TCONS_00056069 mRNA upstream 185877 39372775 ~ 39479644 (-) False XLOC_028990
TCONS_00056070 mRNA upstream 241704 39428602 ~ 39448829 (-) True XLOC_028991
TCONS_00056072 mRNA upstream 287828 39474726 ~ 39487825 (-) False XLOC_028990
TCONS_00056073 mRNA upstream 291970 39478868 ~ 39484284 (-) True XLOC_028990
TCONS_00056047 other downstream 830149 38335552 ~ 38347220 (-) False XLOC_028976
TCONS_00056041 other downstream 939665 38237604 ~ 38237704 (-) True XLOC_028973
TCONS_00056040 other downstream 940179 38237117 ~ 38237190 (-) True XLOC_028972
TCONS_00056039 other downstream 943103 38234160 ~ 38234266 (-) True XLOC_028971
TCONS_00056038 other downstream 943630 38233633 ~ 38233739 (-) True XLOC_028970
TCONS_00056067 other upstream 170768 39357666 ~ 39357785 (-) True XLOC_028988
TCONS_00056068 other upstream 177140 39364038 ~ 39364215 (-) True XLOC_028989
TCONS_00056071 other upstream 264737 39451635 ~ 39469709 (-) True XLOC_028992
TCONS_00056095 other upstream 1710959 40897857 ~ 40897963 (-) True XLOC_029011
TCONS_00056096 other upstream 1711486 40898384 ~ 40898490 (-) True XLOC_029012

Expression Profile

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