RNA id: TU2455417


Basic Information

Item Value
RNA id TU2455417
length 788
lncRNA type intronic
GC content 0.43
exon number 3
gene id G2147060
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 7279370 ~ 7282428 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGattcaactaaccggtgcccccacacattgactctgtaccggctgtatatattgttattttttactcctcctctttaattacttgttacttttatctcttatccatatttttttaaactgcactgtcggttaaggggctcgtaagtaagcatgtcactGCAATATGGAACTTTGGACGTAGTATCAGGTTTTGATTCAGGGGAAGGCGAAGTTGGgtgtgatgtaccgatcctgtgcaggtgttgttgcacgtggtctgccactgcgaggacgatcagctgttcgtcctgtctccctgtagcgctgtcttaggcgtctcacagtacagacattgcaattttttgccctggccacatctgcagtcctcatgcctccttacagcatgcctaaggcacgttcacgcagatgagcagggaccctgggcatcttgcTTTTGGTATTCTTCAGAGTCAGTagcagtagaaaggcctctttagtgtcctaagttgtcataactgtgaccttaattgcctaccgtctgtaagctgttaatgtcttaacgacagttccacaggtgcatgttcattaattgtttattgttcattgaacaagcatgggaaacagtgtttaaaccatttacaatctgtgaagttatttggatttttatgaattatctttgaaagacagggtcctgaaaaagggacgtttctttttttgctgagtttataaaattcttgccaccaacagattgttatatacagtgagggaaaaaagtatttgatcccctgctgattttgtacgtttgcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2455284 lncRNA downstream 90854 7100019 ~ 7188516 (-) True LOC110509571
TU2455286 lncRNA downstream 187309 7081367 ~ 7092061 (-) True LOC110509569
TU2454466 lncRNA downstream 380598 6876755 ~ 6898772 (-) True G2146162
TU2454450 lncRNA downstream 423752 6854980 ~ 6855618 (-) True G2146146
TU2454449 lncRNA downstream 424499 6854163 ~ 6854871 (-) True G2146145
TU2455614 lncRNA upstream 232742 7515012 ~ 7521450 (-) True LOC110509578
TU2455812 lncRNA upstream 495829 7778099 ~ 7825621 (-) True G2147423
TU2455891 lncRNA upstream 577321 7859591 ~ 7881899 (-) True G2147497
TU2455864 lncRNA upstream 603253 7885523 ~ 7888068 (-) True G2147473
TU2455906 lncRNA upstream 608177 7890447 ~ 7890653 (-) True G2147512
XM_021590528.2 mRNA downstream 170881 7104205 ~ 7108489 (-) False LOC110509571
XR_002471447.2 mRNA downstream 194896 7081151 ~ 7084474 (-) False LOC110509569
XM_036967513.1 mRNA downstream 206755 6999640 ~ 7072615 (-) False LOC110509568
XM_036967514.1 mRNA downstream 206755 6999640 ~ 7072615 (-) True LOC110509568
XM_021590235.2 mRNA downstream 335591 6912441 ~ 6943779 (-) True LOC110509308
XM_021590541.2 mRNA upstream 220010 7502280 ~ 7504108 (-) True LOC110509574
LOC110509578 mRNA upstream 238958 7521228 ~ 7528208 (-) False LOC110509578
XM_021590551.2 mRNA upstream 607499 7889769 ~ 7901814 (-) True LOC110509579
XM_021590552.2 mRNA upstream 633115 7915385 ~ 7927945 (-) False gfm2
XM_036967444.1 mRNA upstream 637854 7920124 ~ 7927945 (-) False gfm2
TU2454332 other downstream 629707 6649178 ~ 6649663 (-) True G2146036
TU2454257 other downstream 684896 6581191 ~ 6594474 (-) True LOC110509559
TU2453747 other downstream 1026504 6149576 ~ 6252866 (-) True G2145542
TU2453878 other downstream 1130876 6141066 ~ 6148494 (-) True G2145618
TU2453855 other downstream 1170618 6100771 ~ 6108752 (-) True G2145604
TU2456440 other upstream 848513 8130783 ~ 8168031 (-) False LOC110509586
TU2458082 other upstream 2082942 9365212 ~ 9437537 (-) True ttc33
TU2459830 other upstream 3435751 10718021 ~ 10799318 (-) True G2151189
TU2460429 other upstream 3668979 10951249 ~ 10969301 (-) True ttll11
TU2460472 other upstream 3710896 10993166 ~ 10993879 (-) True G2151771

Expression Profile