RNA id: TU2456480


Basic Information

Item Value
RNA id TU2456480
length 1531
lncRNA type read_through
GC content 0.45
exon number 4
gene id G2148048
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 8202769 ~ 8206564 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGGTTAGTGGGTCATGTGACGCCACAAGCCACGGATGTGAAGCTGCCAATGCGAAACTGGTATACCGCTGGTTGGTGTCCTAGCGGCTGTGACCTGGAAGTAGCAGAATGATTGCCGCCTTTCCTCCCTGAAAGAATGCTGTGCAGTGTGCACATAACAGCGATAAAggatggtctgggggtgcagcAGTGCTGACCTACTGGTTATAGTGGGGGGCGCCACAAGCCACGATGTGAAGCTGCCAATGAGAAATTGGTATATTGGTGTCCTAGCAGATGTAACCTGGAAGTAGCAGAATGATTGCCGCCTTTCCTCCCTGAAAGAATGCTGTGCACAGAACGGTAAGCAACATCCATAGCATTTTAACTTTTTAAGTCTTAAAAGAAAATGTTTAATAGGTCTGTGATGAGAAACCATGCACCACGCTGAACTTGTGATGGATAACCTCTATACCACATTATCTGAGACCTGCAGAGACATAGTTACAAATTCACACAAGCCCTGTTAATGCTACACTGAGCAAATGAACGGGTtggtttcatgagatgaaataaaagctCGCAGAAATCTTCCATGCGCACAAGAACCTTAtttctcaaatgttttgcacaGACTTGtttatacctgttagtgagcattttccttttccaagatgatccatccacctgatatgTGACATAAGCTTctttattaaacagcatgatcattacacaggtaataAAATAAGCCGTTTTgtcaacacaatgtcacagatctCTCATGTTGAAGGAGCGCAATTAGTAtgccgactgcaggaatgtcaaccagagctgaTGCCAGATTTggatattaatttctctaccataagcagcctcCCAACATTTTAGAATTTGTCAGGACTTCCATATTTTCACCTATAGGATCTGAGACCGCTACCCAGACAGCTGAAACTGGATTTGCTCAACATTCAGTTCTGCATGGACTGTCAAACAGTCTCAGGACACTTGGGTGTCTTGACCTGACTATGCTTACCTTTGCTGGGGGAGTTGGTGTGCGAGGAGTTGGCGTGTGCCCTTCACAGGTgtatcccagtttcaactgtaccggttAGATGGCAGGTTGTGTGGGTGCGCAGTTTGATGTCAAAGTTACAAAGAGTGCCCTATGGTGGCAGTGGTGTTACGATATGGGCAACTACATACAAATTGCTGTCGATAACATGTAATTGTGTTCGAGGttccgtgatgagatcctgaagcTCGTTGTGCCGCCATCTGTCTCACCTCGTGTTTCAGCGCTAATCCATGGCCCTATGTTGtaatgatctgtacacaattcctgtgAGCTGAAATGTCCCGTTTCTTCCATGGCTTACATACACAGAGCATGTTTATGATGCTTTGTATGATTGCGTGTTCCTACAATATCATCAACTTCGAACAGGCCacactctatgcgaaggagatgttgtGATGCCTGAGGTAAATGGTTGTTGCACAAGCCTTTATCTGTGACAAATCTATTccctgtcatgtgaaatctacAGATTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2456509 lncRNA downstream 31682 8171685 ~ 8171902 (-) True G2148071
TU2456438 lncRNA downstream 68310 8133772 ~ 8135274 (-) True LOC110509586
TU2456491 lncRNA downstream 77932 8125066 ~ 8125652 (-) True G2148055
TU2455963 lncRNA downstream 162548 8040655 ~ 8041036 (-) True G2147568
TU2455962 lncRNA downstream 163204 8040170 ~ 8040380 (-) True G2147567
TU2456441 lncRNA upstream 4840 8211404 ~ 8216758 (-) True LOC110509589
TU2456704 lncRNA upstream 226982 8433546 ~ 8464718 (-) True G2148247
TU2456711 lncRNA upstream 236468 8443032 ~ 8529631 (-) True G2148253
TU2456814 lncRNA upstream 377993 8584557 ~ 8584921 (-) True G2148352
TU2456834 lncRNA upstream 405443 8612007 ~ 8612250 (-) True G2148371
XR_005040811.1 mRNA downstream 536 8202919 ~ 8203048 (-) True LOC118945696
XM_021590563.2 mRNA downstream 35495 8140782 ~ 8168089 (-) False LOC110509586
XR_005040395.1 mRNA downstream 229197 7964976 ~ 7974387 (-) True LOC110509584
XM_021590559.2 mRNA downstream 229391 7963641 ~ 7974193 (-) False LOC110509584
XM_021590560.2 mRNA downstream 230361 7963641 ~ 7973223 (-) False LOC110509584
XM_036968142.1 mRNA upstream 2718 8209282 ~ 8216845 (-) False LOC110509589
XM_021590572.2 mRNA upstream 17814 8224378 ~ 8232643 (-) True LOC110509590
XM_036967474.1 mRNA upstream 411478 8618042 ~ 8651204 (-) False LOC110509591
XM_021590573.2 mRNA upstream 411478 8618042 ~ 8651918 (-) False LOC110509591
XM_021590574.2 mRNA upstream 411478 8618042 ~ 8678093 (-) False LOC110509591
TU2456440 other downstream 35553 8130783 ~ 8168031 (-) False LOC110509586
TU2454332 other downstream 1553921 6649178 ~ 6649663 (-) True G2146036
TU2454257 other downstream 1609110 6581191 ~ 6594474 (-) True LOC110509559
TU2453747 other downstream 1950718 6149576 ~ 6252866 (-) True G2145542
TU2453878 other downstream 2055090 6141066 ~ 6148494 (-) True G2145618
TU2458082 other upstream 1158648 9365212 ~ 9437537 (-) True ttc33
TU2459830 other upstream 2511457 10718021 ~ 10799318 (-) True G2151189
TU2460429 other upstream 2744685 10951249 ~ 10969301 (-) True ttll11
TU2460472 other upstream 2786602 10993166 ~ 10993879 (-) True G2151771
TU2460556 other upstream 3035430 11241994 ~ 11244060 (-) True LOC100135966

Expression Profile