RNA id: TCONS_00057389


Basic Information

Item Value
RNA id TCONS_00057389
length 1034
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id XLOC_028993
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 39643624 ~ 39702186 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCGGCGCCGCTACAGCGCGGTGATTCAacaggagaaaggataaagtgtccaaacgcagagaaaaactcctgctgaagcgactgatctccacactgttataaagatggcgtttattaaagaggagagtgaagacctTAAGATCGAGGAAACAGTCGAACATGAAGATCTGCAGAAACAAACAGactttattgaagagaatgagaggaaagaggaggaacatcatgtcaaatttGAGGAAAAAactttacagactgatggtattttgaaaaggagagacaggaatcgtttcacctgcactcagtgtggaaggagttttggaagaaaaggtgatcttaagattcacatgaggatccacactggagagaaaccattcacatgcactcagtgtgggaagagttttagccattCTTCAAACTTCaatcaacacataaggatccacactggagagaaaccatttatatgcacacagtgtgggaagagtttcagccgatcatcacacctttatcgacacatgatgatccacaccggagagaaacaaTTCACTTGCACTCTATGTGGGAAGCGTTTTGGAAGAAATTTCGATcctaagattcacatgatgattcacactggagagaaaccattcaaatgcactcaatgtgggaacagtttcatccaatcatcaaaccttaatctacacatgatgatccacaccggagagaaactattcacatgcactcagtgtgggaacagtttcagccgatcatcacaccttaatgaacacatgatgattcataccggagagaaaccattcactggCACTCAGTGtagaagagtttcaaccaatcatcaaaccttaataatcACAAGAAGACCCACACTAGAGATAAACCCTTTACTTGCACCCAGTGTGTGAAgacttttaactgctcatcataccttaatcaacacatgatgatccacacgggagagaaaccattcacatgcactcagtgtggtaagagtttcagccgatcatcacacctttatcgacacatgatgatccacaccggaga

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016071 mRNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0048785 hatching gland development biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006396 RNA processing biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:1903311 regulation of mRNA metabolic process biological_process
GO:0043484 regulation of RNA splicing biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0008380 RNA splicing biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0005488 binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function
GO:0036002 pre-mRNA binding molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058273 lncRNA downstream 332941 39309785 ~ 39310683 (-) True XLOC_028987
TCONS_00058272 lncRNA downstream 375573 39264979 ~ 39268051 (-) True XLOC_028986
TCONS_00056064 lncRNA downstream 478369 39163114 ~ 39165255 (-) False XLOC_028985
TCONS_00058271 lncRNA downstream 727180 38913533 ~ 38916444 (-) True XLOC_028983
TCONS_00056053 lncRNA downstream 1070018 38564564 ~ 38573606 (-) True XLOC_028979
TCONS_00057390 lncRNA upstream 10592 39712778 ~ 39713950 (-) True XLOC_028994
TCONS_00056075 lncRNA upstream 126989 39829175 ~ 39829819 (-) True XLOC_028995
TCONS_00058274 lncRNA upstream 304309 40006495 ~ 40008875 (-) False XLOC_028997
TCONS_00056080 lncRNA upstream 305285 40007471 ~ 40008875 (-) True XLOC_028997
TCONS_00058275 lncRNA upstream 316787 40018973 ~ 40019703 (-) True XLOC_028998
TCONS_00056072 mRNA downstream 155799 39474726 ~ 39487825 (-) False XLOC_028990
TCONS_00056073 mRNA downstream 159340 39478868 ~ 39484284 (-) True XLOC_028990
TCONS_00056069 mRNA downstream 163980 39372775 ~ 39479644 (-) False XLOC_028990
TCONS_00056070 mRNA downstream 194795 39428602 ~ 39448829 (-) True XLOC_028991
TCONS_00056066 mRNA downstream 378345 39244401 ~ 39265279 (-) False XLOC_028986
TCONS_00056076 mRNA upstream 217030 39919216 ~ 39942347 (-) True XLOC_028996
TCONS_00056077 mRNA upstream 290067 39992253 ~ 40008579 (-) False XLOC_028997
TCONS_00056079 mRNA upstream 290200 39992386 ~ 40008099 (-) False XLOC_028997
TCONS_00056078 mRNA upstream 290200 39992386 ~ 40008099 (-) False XLOC_028997
TCONS_00056081 mRNA upstream 655327 40357513 ~ 40364889 (-) False XLOC_028999
TCONS_00056071 other downstream 173915 39451635 ~ 39469709 (-) True XLOC_028992
TCONS_00056068 other downstream 279409 39364038 ~ 39364215 (-) True XLOC_028989
TCONS_00056067 other downstream 285839 39357666 ~ 39357785 (-) True XLOC_028988
TCONS_00056047 other downstream 1296404 38335552 ~ 38347220 (-) False XLOC_028976
TCONS_00056041 other downstream 1405920 38237604 ~ 38237704 (-) True XLOC_028973
TCONS_00056095 other upstream 1195671 40897857 ~ 40897963 (-) True XLOC_029011
TCONS_00056096 other upstream 1196198 40898384 ~ 40898490 (-) True XLOC_029012
TCONS_00056097 other upstream 1203582 40905768 ~ 40905874 (-) True XLOC_029013
TCONS_00056098 other upstream 1205169 40907355 ~ 40907461 (-) True XLOC_029014
TCONS_00056099 other upstream 1209677 40911863 ~ 40911969 (-) True XLOC_029015

Expression Profile

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