RNA id: TU2457784



Basic Information


Item Value
RNA id TU2457784
length 450
lncRNA type antisense_over
GC content 0.50
exon number 3
gene id G2149242
representative True

Chromosome Information


Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 9453654 ~ 9457539 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTTCCGTTTTTGCAGATGTAGTCAAAGAGCTCTCCTCCGGACACGTACTCCATCACCATGAAGATGTCTGTTGGGGTGCTGATCACCTGGTACCTACAGTCAGCTTAATTATGTGAGGATGCCTGAAGAGCTTGAGGTTTTGGATCTCTCTACGTATCTTCCCCACCACATCCAGACTGCGGATCTTCTGTCTGTTCAGGATCTTCACAGCCACCTGGTGTTTGGTCAGCTCATGCTGACCcacTTAACTTTCCCGAACGTCCCCACTCCAAGTGTGTCTCCAAGAATATAATGTCCGATTTTCACTCTTCCTTCATGTTTCTGTTTATCCGTCGTCGCCATCTTTCCCGCAGTGGCCTAGCCTATCTGCTGCTGCGGGCAGGCGGAGCAGACTAGCTGGAGCGAGCAAGAAAATGCGAAACAGCGTGAAAAAATACTCTTccggtcttc

Function


GO: NA

KEGG: NA

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TU2457665 lncRNA upstream 87191 9309984 ~ 9366463 (+) True LOC110509598
TU2457371 lncRNA upstream 252087 9201113 ~ 9201567 (+) True G2148870
TU2457357 lncRNA upstream 272713 9180704 ~ 9180941 (+) True G2148857
TU2457326 lncRNA upstream 273165 9177170 ~ 9180489 (+) True G2148827
TU2457356 lncRNA upstream 277431 9176010 ~ 9176223 (+) True G2148856
TU2457884 lncRNA downstream 159874 9617413 ~ 9617782 (+) True G2149334
TU2457885 lncRNA downstream 161098 9618637 ~ 9619279 (+) True G2149335
TU2458011 lncRNA downstream 324726 9782265 ~ 9782604 (+) True G2149459
TU2459225 lncRNA downstream 928986 10386525 ~ 10386756 (+) True G2150621
TU2459237 lncRNA downstream 938319 10395858 ~ 10396068 (+) True G2150633
XM_021590584.2 mRNA upstream 87136 9360958 ~ 9366518 (+) False LOC110509598
XR_005040380.1 mRNA upstream 243825 9209358 ~ 9209829 (+) True LOC118945275
XM_021590578.2 mRNA upstream 312283 9137291 ~ 9141371 (+) True LOC110509594
XR_005040402.1 mRNA upstream 423817 9024627 ~ 9029837 (+) False LOC118945282
XM_021590592.2 mRNA downstream 606628 10064167 ~ 10309768 (+) False LOC110509604
XM_036968105.1 mRNA downstream 1015893 10473432 ~ 10496533 (+) True zgc:63972
XM_036967237.1 mRNA downstream 1148616 10606155 ~ 10618148 (+) True si:dkeyp-72a4.1
XM_036968136.1 mRNA downstream 1243515 10701054 ~ 10906165 (+) False LOC110509315
XM_036968135.1 mRNA downstream 1283372 10740911 ~ 10906165 (+) False LOC110509315
TU2457713 other upstream 79142 9374000 ~ 9374512 (+) True G2149183
TU2457230 other upstream 421359 8957803 ~ 9032295 (+) False LOC118945282
TU2457227 other upstream 421359 9028161 ~ 9032295 (+) True LOC118945282
TU2455171 other upstream 1453164 8000129 ~ 8000490 (+) True G2146821
TU2454074 other upstream 2795130 6652033 ~ 6658524 (+) False LOC110509307
TU2458634 other downstream 845149 10302688 ~ 10309079 (+) True LOC110509604
TU2459342 other downstream 1004214 10461753 ~ 10462220 (+) True G2150729
TU2460223 other downstream 1902846 11360385 ~ 11366492 (+) True G2151555
TU2460909 other downstream 2306685 11764224 ~ 11766351 (+) True G2152150
TU2461440 other downstream 2843253 12300792 ~ 12307438 (+) True G2152639

Expression Profile


TU2457784 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.5.
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TU2457784 Expression in each Bioproject

Bar chart with 13 bars.
TU2457784 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 5.
End of interactive chart.