RNA id: TU2459239


Basic Information

Item Value
RNA id TU2459239
length 259
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G2150635
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 10398923 ~ 10399181 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aggccatatttgtgcaatatacggctgattgttgtcctatggacagagtctcccacctcagctgtagatctctgcagttcatccagagcgatcatgggcctcttggctgcatctctgatcagtcttctccttgtatgagctgaaagtttagagggacggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatctttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2459237 lncRNA upstream 2855 10395858 ~ 10396068 (+) True G2150633
TU2459225 lncRNA upstream 12167 10386525 ~ 10386756 (+) True G2150621
TU2458011 lncRNA upstream 616319 9782265 ~ 9782604 (+) True G2149459
TU2457885 lncRNA upstream 779644 9618637 ~ 9619279 (+) True G2149335
TU2457884 lncRNA upstream 781141 9617413 ~ 9617782 (+) True G2149334
TU2459243 lncRNA downstream 1875 10401056 ~ 10401273 (+) True G2150639
TU2459257 lncRNA downstream 11799 10410980 ~ 10411698 (+) True G2150653
TU2459271 lncRNA downstream 23293 10422474 ~ 10422770 (+) True G2150667
TU2459287 lncRNA downstream 31047 10430228 ~ 10430534 (+) True G2150683
TU2459303 lncRNA downstream 39264 10438445 ~ 10438761 (+) True G2150699
XM_021590592.2 mRNA upstream 89155 10064167 ~ 10309768 (+) False LOC110509604
XM_021590584.2 mRNA upstream 1032405 9360958 ~ 9366518 (+) False LOC110509598
XR_005040380.1 mRNA upstream 1189094 9209358 ~ 9209829 (+) True LOC118945275
XM_021590578.2 mRNA upstream 1257552 9137291 ~ 9141371 (+) True LOC110509594
XR_005040401.1 mRNA upstream 1369086 9024633 ~ 9029837 (+) False LOC118945282
XM_036968105.1 mRNA downstream 74251 10473432 ~ 10496533 (+) True zgc:63972
XM_036967237.1 mRNA downstream 206974 10606155 ~ 10618148 (+) True si:dkeyp-72a4.1
XM_036968136.1 mRNA downstream 301873 10701054 ~ 10906165 (+) False LOC110509315
XM_036968135.1 mRNA downstream 341730 10740911 ~ 10906165 (+) False LOC110509315
XM_036968133.1 mRNA downstream 341733 10740914 ~ 10906165 (+) False LOC110509315
TU2458634 other upstream 89844 10302688 ~ 10309079 (+) True LOC110509604
TU2457713 other upstream 1024411 9374000 ~ 9374512 (+) True G2149183
TU2457230 other upstream 1366628 8957803 ~ 9032295 (+) False LOC118945282
TU2457227 other upstream 1366628 9028161 ~ 9032295 (+) True LOC118945282
TU2455171 other upstream 2398433 8000129 ~ 8000490 (+) True G2146821
TU2459342 other downstream 62572 10461753 ~ 10462220 (+) True G2150729
TU2460223 other downstream 961204 11360385 ~ 11366492 (+) True G2151555
TU2460909 other downstream 1365043 11764224 ~ 11766351 (+) True G2152150
TU2461440 other downstream 1901611 12300792 ~ 12307438 (+) True G2152639
TU2462149 other downstream 2360699 12759880 ~ 12760490 (+) True G2153316

Expression Profile