RNA id: TCONS_00056076


Basic Information

Item Value
RNA id TCONS_00056076
length 1737
RNA type mRNA
GC content 0.42
exon number 3
gene id XLOC_028996
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 39919216 ~ 39942347 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aagaaaagacttttattttggcgtgtgacgtcatcaggcggcgccgcttcagcgctgtgattcaactggagaaagggcattttttattgttttattcgttttaaacaggataaagtgtccaaacacagaggaaaactcctgctgaagtgactgatctccacactgttataaagatggcgtttattaaagaggagagtgaagatttGAAAATCGAAGAGACATTCtcagtcaaacatgaagatctgaaggaacaaacagaccTAGTTAAAGAGTATGagaggagtaaagaggaggaacatcatgtcaaaattgaagacaaaactcatttagagactgatgatattttaaaaatgagagaCAAGCGTTGTTTTACCTgcaatcagtgtgggaagagtttggcaaacaaaagcaaactaaagatccacatgaggatccacaatagggagaaactattcacatgcactcagtgtgggaagaatttcaaccaatcatcaaaccttaatcaacacatgaggatccacactggggagaagctattcacatgcacccagtgtgggaagagtttcagcaactcagcaaaccttaatcaacacatgaggattcacactggagagaaaccattcacatgtactcagtgtgggaagagtttcagccaatcatcaaaccttaatcatcacatgaggatccacactggagagaaaccattcacatgcagtcagtgtgggaagagtttcagccaatcttcatcccttaatctacacatgaggatacacactggagagaaaccattcacatgtactcagtgtggtaagagtttcagccaatcatcaatccttaatatacacatgaggaaccacactggagagaaaccattcacatgccttcagtgtgggaagagttttagccaatcaacataccttaatcaacacatgaggatccacactggggagaacctattcacatgcacccagtgtgggaagagtttcagcaactcagcaaaccttaatctacacatgaggattcacactggagagaaaccattcacatgtactcagtgtgggaagagtttcagccaatcatcaaaccttaatatacacatgaggattcacactggagagaaaccattcacatgcagtcagtgtgggaagagtttcagccaatcaccaTACCTTAAtcatcacatgaggatccacactggagagaaaccattcacatgcagtcagtgtgggaagagtttcagccaatcatcatcccttaatctacacatgaggatccacactggagagaaaccattcacatgtactcagtgtggtaagagtttcagccaatcatcaaaccttaatatacacatgaggaaccacactggagagaaaccattcacatgccttcagtgtgggaagagttttagccgatcatcatcccttaatcgacacatgatgatccacactggagagaaagagTTTATGTGCTTGAAGTGTGAGaatacttttattacagctgcagaATTGAAACGCCACCAGagggttcacactggagaaaaaccgtacaagtgttcacagtgcagtaagaggtttgctcgctcaggaaccctgaaaacacatgagaggattcacactggagagaaactgtagACATGATCAGTGTGTACAAAGTTTCACTTAATCAgggcagcttaagaaacacatgggaTGGTTTTTGGTAAGGCGCCGACACGTGTAGCAGCATAGAAAGAGCGCT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000124410

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00056075 lncRNA downstream 89397 39829175 ~ 39829819 (-) True XLOC_028995
TCONS_00057390 lncRNA downstream 205266 39712778 ~ 39713950 (-) True XLOC_028994
TCONS_00057389 lncRNA downstream 217030 39643624 ~ 39702186 (-) False XLOC_028993
TCONS_00056074 lncRNA downstream 268942 39643903 ~ 39650274 (-) True XLOC_028993
TCONS_00058273 lncRNA downstream 608533 39309785 ~ 39310683 (-) True XLOC_028987
TCONS_00058274 lncRNA upstream 64148 40006495 ~ 40008875 (-) False XLOC_028997
TCONS_00056080 lncRNA upstream 65124 40007471 ~ 40008875 (-) True XLOC_028997
TCONS_00058275 lncRNA upstream 76626 40018973 ~ 40019703 (-) True XLOC_028998
TCONS_00056084 lncRNA upstream 546217 40488564 ~ 40497140 (-) True XLOC_029001
TCONS_00058276 lncRNA upstream 555470 40497817 ~ 40501755 (-) False XLOC_029002
TCONS_00056072 mRNA downstream 431391 39474726 ~ 39487825 (-) False XLOC_028990
TCONS_00056073 mRNA downstream 434932 39478868 ~ 39484284 (-) True XLOC_028990
TCONS_00056069 mRNA downstream 439572 39372775 ~ 39479644 (-) False XLOC_028990
TCONS_00056070 mRNA downstream 470387 39428602 ~ 39448829 (-) True XLOC_028991
TCONS_00056066 mRNA downstream 653937 39244401 ~ 39265279 (-) False XLOC_028986
TCONS_00056077 mRNA upstream 49906 39992253 ~ 40008579 (-) False XLOC_028997
TCONS_00056079 mRNA upstream 50039 39992386 ~ 40008099 (-) False XLOC_028997
TCONS_00056078 mRNA upstream 50039 39992386 ~ 40008099 (-) False XLOC_028997
TCONS_00056081 mRNA upstream 415166 40357513 ~ 40364889 (-) False XLOC_028999
TCONS_00056082 mRNA upstream 415772 40358119 ~ 40364432 (-) True XLOC_028999
TCONS_00056071 other downstream 449507 39451635 ~ 39469709 (-) True XLOC_028992
TCONS_00056068 other downstream 555001 39364038 ~ 39364215 (-) True XLOC_028989
TCONS_00056067 other downstream 561431 39357666 ~ 39357785 (-) True XLOC_028988
TCONS_00056047 other downstream 1571996 38335552 ~ 38347220 (-) False XLOC_028976
TCONS_00056041 other downstream 1681512 38237604 ~ 38237704 (-) True XLOC_028973
TCONS_00056095 other upstream 955510 40897857 ~ 40897963 (-) True XLOC_029011
TCONS_00056096 other upstream 956037 40898384 ~ 40898490 (-) True XLOC_029012
TCONS_00056097 other upstream 963421 40905768 ~ 40905874 (-) True XLOC_029013
TCONS_00056098 other upstream 965008 40907355 ~ 40907461 (-) True XLOC_029014
TCONS_00056099 other upstream 969516 40911863 ~ 40911969 (-) True XLOC_029015

Expression Profile

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