RNA id: TU2459342


Basic Information

Item Value
RNA id TU2459342
length 468
RNA type TUCP
GC content 0.66
exon number 1
gene id G2150729
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 10461753 ~ 10462220 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgttcCCGGTGCGCAgacatagcccggtgcgctacatagcagcgcctcgcatcggccgggctagagtgggcatcgagccaggtgccatgaagccggctcagtgcatctggtctccagtgcgtctcctcgggacggggtacatggcaccagccctgcgcatggtgtccccggttcgccagcacagcccagtgcggtctattccacctcgcctcactggcctggctacggggagcatccaGCAAGGTAGGGTTGtacaggctcggtgctcgagacctccagtgcgcctccacggtccggtctatccggtgcctcctccacgcaccaggcctccggtggaagccccccgcaccaggctgtctctccatctcctccctacaggtgctcccgcctgctcagcgctgccagagtctcccgtctgtcctgagttgccagagtctcccgtctgtcctgagttgccagagtctccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2459303 lncRNA upstream 22992 10438445 ~ 10438761 (+) True G2150699
TU2459287 lncRNA upstream 31219 10430228 ~ 10430534 (+) True G2150683
TU2459271 lncRNA upstream 38983 10422474 ~ 10422770 (+) True G2150667
TU2459257 lncRNA upstream 50055 10410980 ~ 10411698 (+) True G2150653
TU2459243 lncRNA upstream 60480 10401056 ~ 10401273 (+) True G2150639
TU2459324 lncRNA downstream 40451 10502671 ~ 10503745 (+) False G2150717
TU2459325 lncRNA downstream 40451 10502671 ~ 10503806 (+) False G2150717
TU2459327 lncRNA downstream 40574 10502794 ~ 10503745 (+) False G2150717
TU2459328 lncRNA downstream 40574 10502794 ~ 10503922 (+) False G2150717
TU2459330 lncRNA downstream 40574 10502794 ~ 10503806 (+) False G2150717
XM_021590592.2 mRNA upstream 151985 10064167 ~ 10309768 (+) False LOC110509604
XM_021590584.2 mRNA upstream 1095235 9360958 ~ 9366518 (+) False LOC110509598
XR_005040380.1 mRNA upstream 1251924 9209358 ~ 9209829 (+) True LOC118945275
XM_021590578.2 mRNA upstream 1320382 9137291 ~ 9141371 (+) True LOC110509594
XR_005040403.1 mRNA upstream 1431916 9024629 ~ 9029837 (+) False LOC118945282
XM_036968105.1 mRNA downstream 11212 10473432 ~ 10496533 (+) True zgc:63972
XM_036967237.1 mRNA downstream 143935 10606155 ~ 10618148 (+) True si:dkeyp-72a4.1
XM_036968136.1 mRNA downstream 238834 10701054 ~ 10906165 (+) False LOC110509315
XM_036968135.1 mRNA downstream 278691 10740911 ~ 10906165 (+) False LOC110509315
XM_036968133.1 mRNA downstream 278694 10740914 ~ 10906165 (+) False LOC110509315
TU2458634 other upstream 152674 10302688 ~ 10309079 (+) True LOC110509604
TU2457713 other upstream 1087241 9374000 ~ 9374512 (+) True G2149183
TU2457230 other upstream 1429458 8957803 ~ 9032295 (+) False LOC118945282
TU2457227 other upstream 1429458 9028161 ~ 9032295 (+) True LOC118945282
TU2455171 other upstream 2461263 8000129 ~ 8000490 (+) True G2146821
TU2460223 other downstream 898165 11360385 ~ 11366492 (+) True G2151555
TU2460909 other downstream 1302004 11764224 ~ 11766351 (+) True G2152150
TU2461440 other downstream 1838572 12300792 ~ 12307438 (+) True G2152639
TU2462149 other downstream 2297660 12759880 ~ 12760490 (+) True G2153316
TU2463200 other downstream 3206069 13668289 ~ 13669170 (+) True G2154294

Expression Profile