RNA id: TU2459324


Basic Information

Item Value
RNA id TU2459324
length 1075
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G2150717
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 10502671 ~ 10503922 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttttagaacacctactcattcaaggtttttctttatttttactattttctacattgtagaataatagtgaagacatgaaaactatgaaataacacatatggaatcatgtagattccccccccaaaaagtcttaaacaaatcaaaatatattttatatttgagattattcaaaatagccaccctttgccttgacagctttgtacactcttggcattctctcaaccaccgtcacctggaatgcttttccaacagtcttgaaggagttcccacatatgctgagcacttgttggaagcttttccttcactctgctgtccaactcatcccaaaccaactTAAAGGgggtgaggtcgggtgattgcggaggtcaggtcatctgaagcagcactctatgaatctccttcttggtcaaatagcccttatacagcgtgaaggtgtgttgggtcgggtcattgtcctgttgaaaaacgaattatagtcccactaagcacaaaccagatgggatggcgtatcgctgcagaatgctgtggtagccatgctggttaagtgtgccttgaattctaaataaatctcagacagtgtcaccagcaaagcaaccccacacaatcacacctcctcctcctccatgcttcacggtgggaaccacacatgcagagatcatcctttcacctactctgcgtctcacaaagacacagcgtttGGAACCAAAGATCTcacatttgaactcatcagaccaaaggacagatttccactggtctaatgtccattgctcgtgtttcttggcccaagcaagtctcttcttattggcgtcctttagtagtggtttcttttcagaaattcaaccatgaaggcctgattcacacagtctcctctgaacagctgatgttgagatgtgtctgttacttaaacgcTGTGAGGCATTTATTTAGAacgcaatttctgaggctggtaactctaatgaacttgtcctctgcagcagaggaaactctgggtcttcctttcctgtggcgatcctcatgatccagtttcatcatagcgtttgatggtttttgcgactgcacttgaagaaactatca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2459303 lncRNA upstream 63910 10438445 ~ 10438761 (+) True G2150699
TU2459287 lncRNA upstream 72137 10430228 ~ 10430534 (+) True G2150683
TU2459271 lncRNA upstream 79901 10422474 ~ 10422770 (+) True G2150667
TU2459257 lncRNA upstream 90973 10410980 ~ 10411698 (+) True G2150653
TU2459243 lncRNA upstream 101398 10401056 ~ 10401273 (+) True G2150639
TU2459534 lncRNA downstream 149182 10652927 ~ 10653402 (+) True G2150903
TU2459535 lncRNA downstream 151318 10655063 ~ 10655524 (+) True G2150904
TU2459541 lncRNA downstream 173293 10677038 ~ 10677816 (+) True G2150910
TU2459545 lncRNA downstream 178065 10681810 ~ 10682144 (+) True G2150914
TU2459549 lncRNA downstream 188515 10692260 ~ 10692464 (+) True G2150918
XM_036968105.1 mRNA upstream 6138 10473432 ~ 10496533 (+) True zgc:63972
XM_021590592.2 mRNA upstream 192903 10064167 ~ 10309768 (+) False LOC110509604
XM_021590584.2 mRNA upstream 1136153 9360958 ~ 9366518 (+) False LOC110509598
XR_005040380.1 mRNA upstream 1292842 9209358 ~ 9209829 (+) True LOC118945275
XM_021590578.2 mRNA upstream 1361300 9137291 ~ 9141371 (+) True LOC110509594
XM_036967237.1 mRNA downstream 102410 10606155 ~ 10618148 (+) True si:dkeyp-72a4.1
XM_036968136.1 mRNA downstream 197309 10701054 ~ 10906165 (+) False LOC110509315
XM_036968135.1 mRNA downstream 237166 10740911 ~ 10906165 (+) False LOC110509315
XM_036968133.1 mRNA downstream 237169 10740914 ~ 10906165 (+) False LOC110509315
XM_036968137.1 mRNA downstream 316437 10820182 ~ 10906165 (+) False LOC110509315
TU2459342 other upstream 40451 10461753 ~ 10462220 (+) True G2150729
TU2458634 other upstream 193592 10302688 ~ 10309079 (+) True LOC110509604
TU2457713 other upstream 1128159 9374000 ~ 9374512 (+) True G2149183
TU2457230 other upstream 1470376 8957803 ~ 9032295 (+) False LOC118945282
TU2457227 other upstream 1470376 9028161 ~ 9032295 (+) True LOC118945282
TU2460223 other downstream 856640 11360385 ~ 11366492 (+) True G2151555
TU2460909 other downstream 1260479 11764224 ~ 11766351 (+) True G2152150
TU2461440 other downstream 1797047 12300792 ~ 12307438 (+) True G2152639
TU2462149 other downstream 2256135 12759880 ~ 12760490 (+) True G2153316
TU2463200 other downstream 3164544 13668289 ~ 13669170 (+) True G2154294

Expression Profile