RNA id: TCONS_00005308


Basic Information

Item Value
RNA id TCONS_00005308
length 571
RNA type processed_transcript
GC content 0.49
exon number 4
gene id XLOC_002866
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 32534814 ~ 32610776 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTCAGAATTACCCAGTTAACTTGTTTATTTGTGGAGCGTGTGGGAATAAGTAAACAAATCATACCTGGATCTTTGAGTTCTCCAGAGCTGGATTTTACTTACTTGACGTCCGGAGCGAAGCGAACTACTCCCCGACTCCGTGGTTCTGGTCGTTCCACCAGTGGTTCTCCTCCAGAGGTACCCGCGGAATAATAATCGCTGACTCGTCCGACGCCAGACTCACATTCTCTAAGGAGCAGCACAGTGTTATTGCCAAAGGAGGAGCATGAGGGCgacagagggagagaaagagacacAGAGACACAACATGAGCGCCCTGCTGTATTGTCCTGTTCTTCATCCTGCTCTTCACTCGTTTCTGGCTCATCAGTGTGCTTTATGCCACCTGGTGGTACATCGACTGGGACACACCTTCACGAGGAGGGAGAAAAGTGCCATATCTCTGCAAACTGCGTGTGTGGGAGTACATGAGAGATTATTTCCCCATTAGGctgataaagacggctgacttGGACACTAGGAAGAACTATGTGATGGGTTTCCATCCTCATGGTATTCTCGTGGCTGGTG

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0006651 diacylglycerol biosynthetic process biological_process
GO:0001878 response to yeast biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups molecular_function
GO:0003846 2-acylglycerol O-acyltransferase activity molecular_function
GO:0008374 O-acyltransferase activity molecular_function

KEGG:

id description
ko00561 Glycerolipid metabolism
ko04975 Fat digestion and absorption

ZFIN:

id description
ZDB-GENE-041010-186 Predicted to enable 2-acylglycerol O-acyltransferase activity. Acts upstream of or within response to yeast. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Is expressed in intestinal bulb and yolk syncytial layer. Orthologous to several human genes including MOGAT2 (monoacylglycerol O-acyltransferase 2).

Ensembl:

ensembl_id ENSDART00000141729

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005771 lncRNA downstream 291690 32229939 ~ 32250846 (-) True XLOC_002863
TCONS_00006079 lncRNA downstream 291765 32216413 ~ 32250771 (-) False XLOC_002863
TCONS_00006080 lncRNA downstream 302808 32229939 ~ 32239728 (-) False XLOC_002863
TCONS_00006078 lncRNA downstream 457912 32077811 ~ 32084624 (-) True XLOC_002862
TCONS_00006077 lncRNA downstream 458415 32077811 ~ 32084121 (-) False XLOC_002862
TCONS_00005772 lncRNA upstream 66041 32676810 ~ 32678245 (-) True XLOC_002870
TCONS_00006082 lncRNA upstream 169111 32779880 ~ 32780290 (-) True XLOC_002871
TCONS_00006083 lncRNA upstream 284228 32894997 ~ 32896944 (-) True XLOC_002875
TCONS_00006084 lncRNA upstream 547820 33158589 ~ 33164573 (-) True XLOC_002877
TCONS_00005338 lncRNA upstream 1006855 33617624 ~ 33618942 (-) True XLOC_002889
TCONS_00005304 mRNA downstream 17765 32502354 ~ 32524771 (-) True XLOC_002865
TCONS_00005303 mRNA downstream 18501 32501961 ~ 32524035 (-) False XLOC_002865
TCONS_00005301 mRNA downstream 48037 32265064 ~ 32494499 (-) False XLOC_002864
TCONS_00005300 mRNA downstream 48232 32264857 ~ 32494304 (-) False XLOC_002864
TCONS_00005302 mRNA downstream 77074 32383577 ~ 32465462 (-) True XLOC_002864
TCONS_00005310 mRNA upstream 2937 32613706 ~ 32639939 (-) False XLOC_002868
TCONS_00005311 mRNA upstream 2937 32613706 ~ 32639941 (-) True XLOC_002868
TCONS_00005312 mRNA upstream 46727 32657496 ~ 32660716 (-) False XLOC_002869
TCONS_00005313 mRNA upstream 46727 32657496 ~ 32660737 (-) False XLOC_002869
TCONS_00005314 mRNA upstream 46727 32657496 ~ 32663759 (-) True XLOC_002869
TCONS_00005293 other downstream 1437782 31021356 ~ 31104754 (-) True XLOC_002857
TCONS_00005286 other downstream 2011279 30531143 ~ 30531257 (-) True XLOC_002854
TCONS_00005276 other downstream 2803428 29736186 ~ 29739108 (-) True XLOC_002847
TCONS_00005273 other downstream 2834354 29708068 ~ 29708182 (-) True XLOC_002845
TCONS_00005263 other downstream 3618903 28923517 ~ 28923633 (-) True XLOC_002838
TCONS_00005329 other upstream 766049 33376818 ~ 33376941 (-) True XLOC_002883
TCONS_00005330 other upstream 766232 33377001 ~ 33377086 (-) True XLOC_002884
TCONS_00005331 other upstream 766361 33377130 ~ 33377214 (-) True XLOC_002885
TCONS_00005343 other upstream 1421514 34032283 ~ 34033421 (-) True XLOC_002893
TCONS_00005358 other upstream 1716493 34327262 ~ 34327394 (-) True XLOC_002902

Expression Profile

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