RNA id: TU2459549


Basic Information

Item Value
RNA id TU2459549
length 205
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G2150918
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 10692260 ~ 10692464 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtacgagtctgctgttaatgataatgcagaggattttcccaaggttgctgttgacgcatatcccacggtagttattggggtcaaatttgtgtccacttttgtggattggggtgatcagtccttggttccaaatattggggaagatgccagagctaaggatgatgttaaagagttttagtatagccaattggaatttgttgtctgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2459545 lncRNA upstream 10116 10681810 ~ 10682144 (+) True G2150914
TU2459541 lncRNA upstream 14444 10677038 ~ 10677816 (+) True G2150910
TU2459535 lncRNA upstream 36736 10655063 ~ 10655524 (+) True G2150904
TU2459534 lncRNA upstream 38858 10652927 ~ 10653402 (+) True G2150903
TU2459329 lncRNA upstream 188454 10502883 ~ 10503806 (+) True G2150717
TU2459555 lncRNA downstream 6880 10699344 ~ 10699589 (+) True G2150924
TU2459570 lncRNA downstream 22424 10714888 ~ 10715168 (+) True G2150939
TU2459584 lncRNA downstream 49623 10742087 ~ 10758788 (+) True G2150952
TU2459719 lncRNA downstream 221401 10913865 ~ 10914199 (+) True G2151080
TU2459956 lncRNA downstream 234907 10927371 ~ 10927599 (+) True G2151305
XM_036967237.1 mRNA upstream 74112 10606155 ~ 10618148 (+) True si:dkeyp-72a4.1
XM_036968105.1 mRNA upstream 195727 10473432 ~ 10496533 (+) True zgc:63972
XM_021590592.2 mRNA upstream 382492 10064167 ~ 10309768 (+) False LOC110509604
XM_021590584.2 mRNA upstream 1325742 9360958 ~ 9366518 (+) False LOC110509598
XR_005040380.1 mRNA upstream 1482431 9209358 ~ 9209829 (+) True LOC118945275
XM_036968136.1 mRNA downstream 8590 10701054 ~ 10906165 (+) False LOC110509315
XM_036968135.1 mRNA downstream 48447 10740911 ~ 10906165 (+) False LOC110509315
XM_036968133.1 mRNA downstream 48450 10740914 ~ 10906165 (+) False LOC110509315
XM_036968137.1 mRNA downstream 127718 10820182 ~ 10906165 (+) False LOC110509315
XM_036968134.1 mRNA downstream 139295 10831759 ~ 10906165 (+) True LOC110509315
TU2459342 other upstream 230040 10461753 ~ 10462220 (+) True G2150729
TU2458634 other upstream 383181 10302688 ~ 10309079 (+) True LOC110509604
TU2457713 other upstream 1317748 9374000 ~ 9374512 (+) True G2149183
TU2457230 other upstream 1659965 8957803 ~ 9032295 (+) False LOC118945282
TU2460223 other downstream 667921 11360385 ~ 11366492 (+) True G2151555
TU2460909 other downstream 1071760 11764224 ~ 11766351 (+) True G2152150
TU2461440 other downstream 1608328 12300792 ~ 12307438 (+) True G2152639
TU2462149 other downstream 2067416 12759880 ~ 12760490 (+) True G2153316
TU2463200 other downstream 2975825 13668289 ~ 13669170 (+) True G2154294

Expression Profile