RNA id: TU2459946


Basic Information

Item Value
RNA id TU2459946
length 6368
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G2151295
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 10905319 ~ 10911707 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGCAAATGTACATAAATTGCACAGCCAcattgtttttatatatatatcgtCAACACAAACAAATTCCTCTGTACATTATTGTTTTTGTCACTGTTGTCCAAAGGAAGCAGAATCCAGCCAATACTTTACTTTCAACATCATTACAAAAGCATTTTCTACAAGATATTAGAAAACATACATCTTTTACTTTATTTATAGATATATATTTAATTTATagtattttttttctccactGGCTGTAACTGCACTGTATGTActatataattgtgtgtgtgtgtgtggctacatTGACATCATCATcacatttctctctctgactctcatctCCTACATTCTTTAACAACTTAACGAAGGTGGAACGGCGGAGGGACGTGACCAGAAACAGACAAGAGGGTTTAGAATTGATTGCCAAATGAAGGACATTGCATTGCCAATTTCTATGGAAGTGGCATTATGCTATGTGGCACTGGTAACACAAATTGATAATGACAGTTTATACCAGTATTAAACTAGCTGATTTGGGAGAGTTGGCATtttccatttcctgtttcagtttAGAGGTACAGAGGACTAGAGAGAACACATCCCTAAAGACGGAAGTCTTGACCTCATCTAGTCCTCTCTACAACAGTCAGTAATGTCTTTTCCCCTCAAAATGCTGGACATAAAATACACAATTGAAGTAAATTGAGTGAGCAAATTTATATGAGTATTGCACTCAGTAGTACACTCCACGACATGGCTGATCAAGCCAGGAGTGCACACGTCTGCAGTCCAAAAGACAGGGGTGTGTTTATGGAACGTAGACTAGGGGCTGGAGTCAATCCGTGTCGCGGAAGATCCACGTTAAAATGTCTAGATCATTTCCAATTGCGCTGACATGTGCAGCGTTTACGGGTAAATGCAGTTTCCGCGAATGTGCCACGCTCCGCGTTACATTCGAGCAACCCCATTGACTGAAACTCATCCCTGTATGTTAACTTCGTGGACTATGAGAAAGCATTTGACAGCTTAGACAGAGACGCCCTATGGAGGCTCCTCAGACCAGGGAAGCTTGCCAGAATGATCTGCACTACCTATAATGGCATAACATGCAGGGTTGTGCATGCAGGCAAGCTTAACTCACCCTTCAGACTCCTGACTAGAGAAAAACAGGATGTCTCCTGTCACCCTTCCTTTTCCTGTTAGACATTGACTGGGTCATGAGGAAGACAACCGAGAACAGGTGACATGGCATACAATGGTCTCTATGGACACAGTTGGACGACCTCAACTTTGCGGAGGATCTAGCACTCCTGTCGCACAGTCAACAGCAAATGCAATATAAAACGTCAGACCTGGACACCACATCATCCCAGCCAAGACTCCATATCCACAGAAAACAAAACCAAGATAACGATCAACGACGAATCTAACAATCCAATCACCCTCAGAAGAAGAACCCCTGGAGGATGCCAGTTCCTTCACCGATCTGTGATGCGTCATCACCAAACAAGGCGAAACCGAGCAGGATGTAAAGGCAGAATTCAAAAAGCAAGAGTAGCCTTCATCTCCCAAAGAAACAAGAGTAGCCTTCATCTCCCATCTGGAGCTCCAGGAAAATGAAAACGCAAACCCTTTCAACACCAATGTTAAGTCAGTGATGGCTGTATGGCTCAGACAAATGGAGGACAATGTCTTCCATTtgtccgtgcttctacacctgcattgcttgctgtttggggttttaggctgggtttctgtacagcactttgagatatcagctgatgtatgaagggctatataaataaatttgatttgacaacaaAACCCACAATGACAACAACTCAGAGCTTCATAAACAAGGGCCTGCGACGCAATCCTTCACATCAGATGGATGGGCAGAGTCCGTAGCATTGACCCGTGGGAGCGCATCAGCCAGGTTCCGGTGGAAGAGGAGATCCGGAGGAGAAGATGGGGATGGATCGGCCACACCCTCCGAAAGTTCCCCTCCAACATCACCAGGCAAGCGCTATACTAGAACCCACAAGGGAGCTCCCGAAGGAACGTAAGTAAGTCTCTGCGAACGTCGGGAACATTGCCTTTGAATTTAAATCCGATACGGTTTGGATCCAGCTCTATCAATGCTTAAAACCTCCATTGTAAAAGTGCAGAGCTGGGCTGATGACAAATGGGgttttgtgcttgtgtttctctctcaccaCACCTGATTGGGTCATAGGTCGCTGGACATTTGGACTCTCTCTGACCTCTACACGCCAGACATCATCCAAAACCTCTCAGAGTCAACATagtcatttacatttttttgcaaTATACTCTTGAAGTGTTTTTTCCTTGATAAAAAAAGAGTATATTgaatgcggggggggggggggggggggggggggaattagaGGATTGCACTAAAACCTGGAGATCTAGCTGAACAGGACAGATGGCTGGTTGAGCTATTTACAATATCCATGATGTCATATCAATCGATACAGCAGTATTATTGAACACAAGGTACATTTACAAAAAAAGGCTCTCTTTTTAACATTAGTTAAAAATATTGTGAACATTTTATCTACACTCTCGTCTCCAAGGCTGTCCAGCCTCTTGATACACTCATCATTATCATATATTTATATGATATATAAATCACATATCATTCATGTCTGCAGCAACTCATAAAAACAACATTCCATCATCTTCCTATATTGAAAACATattcttttacattttttttgaaaTGGTGACGCAGTGGGTCGCTACCATTCCTTACGGCGCCAAAATGAAGCATGCAGATTTTTCAACCCTAACTCATCTGTAAAGGTAAGAAAAATGAATtacaaaaatatacaaaatatagaTGTGCTGAAAATGTCTGTGGGGTGGTGGGAGCAAGCGGGAACAGTAGCTATAGGATCATTCAGGGACAATAGGTCTAGACCCCACATTAGGGTCTAGACCCCACATTAAGACCAACCGTGTGTTTGAGTAGCATCTTCACATTCaatagagagagggaatgagggagaaggggagagggaaaaaagaggagaggagagagagatgcctCGAAGCGAAGTGGGGGGGTCACAGTCTTTATGCGGCATGCTTCTTTGACATGAATTAGCAAACAGGAGAGTTTTAAGAAAAAGCGTACGATTCTAACCTGTGAGGTCACAttataacacacaccagtccagtGTATAGTATAACATCGTGTTCAACAACGcaactctctctccccttgtgcTACAGGGCTATCCGACCAGCCATGGCTCCTGAACACGAAGCGACACACAACCAACATACGCCGTCGTTTCAACGTCGATTCAACATTATTGGTGAAGCACTAAAGCAAACCTCAATCCCGACCGGGTCTATTTCCAAAAACCTGGATAAAGTACAggtcaagaagaagaagaagaagaaaggaaaCAGGATATGTATTTCATCTGCTTATGGTGCAACTCACAGCATAGTGTGCAGTCTCTCCCTGCCCCGAAGCCCTATAAGACACACTATAGCTGCAACCACACACTCCTTGGAACGGGCTTCTTTCGTACTCGACCTGAtcaaatatatctatatatatcatGTATACTTTACAGAGGGAAAAATGAAATATGCATACATCTATCTTACATTAGTATATTTTCACATACAGGTCATGATTTAGTGTTCATAACACATTTTGCGTGATGTATTTGtacaatatatttatattccTTTACAAATCTACTGTATCATAAGACGtgccttttgttgttgttgttgcaggaatAGGGGGTCTGAAGGACAAAGTAGAGATGTGTTCCTTACTTAAGGCGTTTCATGTACCAATAGCTTTCacacagtgcactatatagggagaggaggaaaaagcGGAAGTGTTTCGGCCCTCCAGGACTGACACTGAACAGCCCGGGGTTAGGGCAGGAGTAGGCAGGTCGATTCTGCTGCGGGACTATTGTTGTCAGAGTGGATGGTTGGGGACCGGAACATTGCTATGatcatttgtacactgcaaattgacaaCAGCCCAAAAgaagattgtatttgaaaataataatacatttcaaTACCTTGATTACACTGAGACAcggtcacatacagtgccttcgctGAGTATTTACACCTCTTCActtttttttcaacattttgtaacgttacaaccttattctaaaattgattaaatagtcccccccccccctcatcaatctacacacaataccccataatgacaaagcaaaaacaggtgtttagaaatgtttgctaataaaaattaaatatcacatttacataagtattcataacctttactttgttgaagcacctttggcagcgattacagcatcgagtgtccttgggtatgacgctgcaagcttggcacacctgtatttgggcagtttctcgcattcttctctgcagatcctctcaagctttgtcaggttggatggggagcgtcgctgcactgctattttcaggtctccccagagatgtttgatcgggttcaagtccggactttggctgggccactcaaggacattcagagacttgtcccgaagccactcctgcgttttcttggctgtgtgcttagggtcatggtcctgttggagggtgaacctttgccccagtctgtcctgagcgctctggagaggatcaaggatctctctctactttgcctCTTTGCCACCAACATTCTTCTCCAtccggatggtgccaggtttcctccagacgtggcgcttggcattaaggccaaagagttcaatcttggtttcatcagaccagagaatcttgtttctcatggtcgggggtctttaggtgccttttggcaaactccaagcaggctgtcatgtgccttttactgaggagtgtcttccatctggccactctaccataaaggcctgattggtggagtgctgcagagatggttgtccttctggtgggttattccatctccacagaattctggagctctgccagagtgaccaccgggttcttggtcacctccctgaccaaggcccttctcccccgattgctcagtttggccgggcggccagagtcttggtggttccacatttcttccatttaagaatggtgaAGGCCGCTGTGTTCCtgggggccttcaatgctgcagaatttttttgttacctttccccagatctgtgccaggACACAATCCTGTGTCGGGGGTCTACGAACAATTACTTTGACATCATTGCTtgttttttgttctgacatgcactgtcaactgtgggacctgataTAGTCAAgagtgtgtgcctttctaaatcatgtccaatcaatttcaaagataatcaatggaaaccggatgcacctgagctcaattttgagtctcatagcaaagggtctgaatacttaggtatttctgtttttatattttaatacatttgcaaacatttctaaaaacctgttttcaatttgtcattgtgggatattgtgtgctcaggattttttttaaagtctgtaacgtaacgtggaaaaagtcaaggggtctgaatactttgcgaaggCACTGCATGTCTCTTTTTTTTATTCTTGGGAATATTtaggaacagatttcctaaattaaacaaATCTTTTGCTGAATTCATAGTGATTTTACAGTCTTTTTGACCATAAACTAAAATTCCCTCAACAAGTATTATTATTGTTCGGGGTTGTATTATTATTGTTCGGGGTTGTATTATTATTGTTCTGTTTTGTACACGGTCCACATGACCTGGTCGtaacagagaagagaggagaagagaggaggtcaggaaaggagaggaaacagaggagaggggaagagagaggattgGGTGActatctgacagacagacattgtgTTCATTATAATGATTTGTCCAAAGCTTTAGGGAAGAGTCCGAAATTGTCCCAGCAACTGCATACATCCAATGGAAACATCCAAATCGGTTGATTAATGGAGAGTTCAGTTCATATCTACAGCTTGTCCCGCCTCCTCCTCTGCAGGGCCCACTGGTATTCAGCTCTGTCCATTGATTCGCTGTCACTGACTTGGTCAGCTGTCTGTCAAACTGAAGTCCCGCCGCCTCGCTGCTTGGCCCCTCACAGTGGTCTCCTCACTTAGACTAACCCCCGTTTAGTGTCCATATAAGGAAGTGTCCTTTACAAGCaccagccaacacacacacacacacatccactctCTATCAGACTCTCTCTAGCAGTTGCTGCTGTTCCTGAACTCTCCGTTCTCAGTGATCTGGAGCTTGGTGGGATTGGTCGGGGATATGCCGTTACGGGTCTGCATGCTGTAGCGCTCCTTCAGCTGGGTCAGGGCACTCATCAGACGGGCGTTGGCTGCGTCAAGAGACGCGATACGCTt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2459828 lncRNA downstream 190211 10714882 ~ 10715108 (-) True G2151187
TU2459826 lncRNA downstream 191364 10713756 ~ 10713955 (-) True G2151185
TU2459817 lncRNA downstream 200266 10704852 ~ 10705053 (-) True G2151176
TU2459813 lncRNA downstream 203119 10701992 ~ 10702200 (-) True G2151172
TU2459812 lncRNA downstream 203978 10700998 ~ 10701341 (-) True G2151171
TU2459947 lncRNA upstream 74 10911781 ~ 10912062 (-) True G2151296
TU2460428 lncRNA upstream 11382 10923089 ~ 10924429 (-) False ttll11
TU2460433 lncRNA upstream 18205 10929912 ~ 10930188 (-) True G2151734
TU2460437 lncRNA upstream 21644 10933351 ~ 10933571 (-) True G2151738
TU2460439 lncRNA upstream 22873 10934580 ~ 10934793 (-) True G2151740
XR_002471422.2 mRNA downstream 847550 10051204 ~ 10057769 (-) True LOC110509356
XM_021590591.2 mRNA downstream 1144411 9510367 ~ 9760908 (-) True lamc3
XM_021590589.2 mRNA downstream 1145412 9510367 ~ 9759907 (-) False lamc3
XM_036967797.1 mRNA downstream 1403900 9461338 ~ 9501419 (-) True aif1l
XM_021590586.2 mRNA downstream 1447800 9444050 ~ 9457519 (-) True LOC100653467
XM_021590597.2 mRNA upstream 11363 10923070 ~ 10969315 (-) False ttll11
XM_036967575.1 mRNA upstream 11363 10923070 ~ 10969315 (-) False ttll11
XM_036967595.1 mRNA upstream 92383 11004090 ~ 11016768 (-) False LOC110509609
XM_036967594.1 mRNA upstream 92383 11004090 ~ 11017772 (-) False LOC110509609
XM_021590599.2 mRNA upstream 92383 11004090 ~ 11018061 (-) False LOC110509609
TU2459830 other downstream 106001 10718021 ~ 10799318 (-) True G2151189
TU2458082 other downstream 1467782 9365212 ~ 9437537 (-) True ttc33
TU2456440 other downstream 2737288 8130783 ~ 8168031 (-) False LOC110509586
TU2454332 other downstream 4255656 6649178 ~ 6649663 (-) True G2146036
TU2454257 other downstream 4310845 6581191 ~ 6594474 (-) True LOC110509559
TU2460429 other upstream 39542 10951249 ~ 10969301 (-) True ttll11
TU2460472 other upstream 81459 10993166 ~ 10993879 (-) True G2151771
TU2460556 other upstream 330287 11241994 ~ 11244060 (-) True LOC100135966
TU2460707 other upstream 544911 11456618 ~ 11525152 (-) True LOC110509625
TU2460859 other upstream 810365 11722072 ~ 11722479 (-) True G2152107

Expression Profile