RNA id: TU2459719


Basic Information

Item Value
RNA id TU2459719
length 335
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G2151080
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 10913865 ~ 10914199 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cccgtctgaagtttgctagagagcatttggatgatccagaaaaaGATTGGGAGAATGGTCATATCAAACCAAAAtcaaactttttggtaaaaactaaactcgtcgtgtttggaggacaaagaatgctgagttgcatacaaagaacaccatacctactgtgaagcatgggggtggaaacatcatgctttggggctgtttttctgcaaaatgaccaggacgactgatccgtgtaaaggaaggaatgaatggggccatgtatcgtgagattttgagtgaaaacctccttccatcagcaagggcattgaagatgaaatgtggctgggtctttcagcatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2459584 lncRNA upstream 155077 10742087 ~ 10758788 (+) True G2150952
TU2459570 lncRNA upstream 198697 10714888 ~ 10715168 (+) True G2150939
TU2459555 lncRNA upstream 214276 10699344 ~ 10699589 (+) True G2150924
TU2459549 lncRNA upstream 221401 10692260 ~ 10692464 (+) True G2150918
TU2459545 lncRNA upstream 231721 10681810 ~ 10682144 (+) True G2150914
TU2459956 lncRNA downstream 13172 10927371 ~ 10927599 (+) True G2151305
TU2459958 lncRNA downstream 15286 10929485 ~ 10929688 (+) True G2151307
TU2459966 lncRNA downstream 27321 10941520 ~ 10941740 (+) True G2151315
TU2460000 lncRNA downstream 67640 10981839 ~ 10982360 (+) True G2151347
TU2460011 lncRNA downstream 87106 11001305 ~ 11001771 (+) True G2151358
XM_036968136.1 mRNA upstream 7700 10701054 ~ 10906165 (+) False LOC110509315
XM_036968135.1 mRNA upstream 7700 10740911 ~ 10906165 (+) False LOC110509315
XM_036968133.1 mRNA upstream 7700 10740914 ~ 10906165 (+) False LOC110509315
XM_036968137.1 mRNA upstream 7700 10820182 ~ 10906165 (+) False LOC110509315
XM_036968134.1 mRNA upstream 7700 10831759 ~ 10906165 (+) True LOC110509315
XM_021590598.2 mRNA downstream 60243 10974442 ~ 11003230 (+) False LOC110509607
XM_021590601.2 mRNA downstream 106871 11021070 ~ 11022671 (+) True LOC110509610
XM_036967250.1 mRNA downstream 111550 11025749 ~ 11044674 (+) True LOC110509611
XM_021590606.2 mRNA downstream 162266 11076465 ~ 11107444 (+) False LOC100136324
XM_021590608.2 mRNA downstream 162309 11076508 ~ 11112463 (+) False LOC100136324
TU2459342 other upstream 451645 10461753 ~ 10462220 (+) True G2150729
TU2458634 other upstream 604786 10302688 ~ 10309079 (+) True LOC110509604
TU2457713 other upstream 1539353 9374000 ~ 9374512 (+) True G2149183
TU2457230 other upstream 1881570 8957803 ~ 9032295 (+) False LOC118945282
TU2460223 other downstream 446186 11360385 ~ 11366492 (+) True G2151555
TU2460909 other downstream 850025 11764224 ~ 11766351 (+) True G2152150
TU2461440 other downstream 1386593 12300792 ~ 12307438 (+) True G2152639
TU2462149 other downstream 1845681 12759880 ~ 12760490 (+) True G2153316
TU2463200 other downstream 2754090 13668289 ~ 13669170 (+) True G2154294

Expression Profile