RNA id: TCONS_00056080


Basic Information

Item Value
RNA id TCONS_00056080
length 716
lncRNA type retained_intron
GC content 0.47
exon number 3
gene id XLOC_028997
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 39992253 ~ 40008875 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtcgtgtttattataaataagcagctgctgcagctagtggtccataagtatgagcaaaacgcctgagaacagcgcctccgcggagcggccggtatttccggttgcgtcgtcctaacatcggccggacagcgtttccgatcatttgccgacgttgcggcgacattttgccaattagcaaacgctccctgagcgacatcgcaccgatggaattttgaaaatcggcacgacgtcggccaaacgtatgtgtgctgtctgggacGCTGCTTTCTATAACTCGCcacacaagaagaagaagaagaagaagaggaggaggaggcggAGGATGTCCGGTTACTTCTAGAGTTTCTGCTGGAGATCAAACTCTTCAGAtccatcatggaggacacacacacacctgaagatCTGTACTTATCTACAGGATGCAGttcagttcatcagaagagagcagaagcagagcccagctgtgtgtctatgaagagtgacgcgtCTATGGATCCACCATTATATTTTAAGAGTGAAAACACAGaacctgctgtcaggtagatcatctctttaatatctgcaactgatgagtattttcataataaatgaatcaggtaattagtgttgtggatctgttgggtttcagatgttagatgttgtatctgagctctgcaggatagtgcttgaagatctccactttacacttcaggccacaattgatggtgttaacaaac

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000160459

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00056075 lncRNA downstream 177652 39829175 ~ 39829819 (-) True XLOC_028995
TCONS_00057390 lncRNA downstream 293521 39712778 ~ 39713950 (-) True XLOC_028994
TCONS_00057389 lncRNA downstream 305285 39643624 ~ 39702186 (-) False XLOC_028993
TCONS_00056074 lncRNA downstream 357197 39643903 ~ 39650274 (-) True XLOC_028993
TCONS_00058273 lncRNA downstream 696788 39309785 ~ 39310683 (-) True XLOC_028987
TCONS_00058275 lncRNA upstream 10098 40018973 ~ 40019703 (-) True XLOC_028998
TCONS_00056084 lncRNA upstream 479689 40488564 ~ 40497140 (-) True XLOC_029001
TCONS_00058276 lncRNA upstream 488942 40497817 ~ 40501755 (-) False XLOC_029002
TCONS_00056085 lncRNA upstream 488942 40497817 ~ 40503730 (-) True XLOC_029002
TCONS_00058277 lncRNA upstream 543284 40552159 ~ 40598742 (-) True XLOC_029004
TCONS_00056076 mRNA downstream 65124 39919216 ~ 39942347 (-) True XLOC_028996
TCONS_00056072 mRNA downstream 519646 39474726 ~ 39487825 (-) False XLOC_028990
TCONS_00056073 mRNA downstream 523187 39478868 ~ 39484284 (-) True XLOC_028990
TCONS_00056069 mRNA downstream 527827 39372775 ~ 39479644 (-) False XLOC_028990
TCONS_00056081 mRNA upstream 348638 40357513 ~ 40364889 (-) False XLOC_028999
TCONS_00056082 mRNA upstream 349244 40358119 ~ 40364432 (-) True XLOC_028999
TCONS_00056083 mRNA upstream 393142 40402017 ~ 40407853 (-) True XLOC_029000
TCONS_00056086 mRNA upstream 516200 40525075 ~ 40536045 (-) False XLOC_029003
TCONS_00056087 mRNA upstream 517139 40526014 ~ 40536509 (-) True XLOC_029003
TCONS_00056071 other downstream 537762 39451635 ~ 39469709 (-) True XLOC_028992
TCONS_00056068 other downstream 643256 39364038 ~ 39364215 (-) True XLOC_028989
TCONS_00056067 other downstream 649686 39357666 ~ 39357785 (-) True XLOC_028988
TCONS_00056047 other downstream 1660251 38335552 ~ 38347220 (-) False XLOC_028976
TCONS_00056041 other downstream 1769767 38237604 ~ 38237704 (-) True XLOC_028973
TCONS_00056095 other upstream 888982 40897857 ~ 40897963 (-) True XLOC_029011
TCONS_00056096 other upstream 889509 40898384 ~ 40898490 (-) True XLOC_029012
TCONS_00056097 other upstream 896893 40905768 ~ 40905874 (-) True XLOC_029013
TCONS_00056098 other upstream 898480 40907355 ~ 40907461 (-) True XLOC_029014
TCONS_00056099 other upstream 902988 40911863 ~ 40911969 (-) True XLOC_029015

Expression Profile

//