RNA id: TU2459994



Basic Information


Item Value
RNA id TU2459994
length 975
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id G2151341
representative True

Chromosome Information


Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 11003261 ~ 11005434 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TATTAAAACCAGTatgaatgtaaaacaaaataacatcgtaaaaaaaaaagacaaaaaaaagaccAAACTACTTGGTAAAACAATTAGATTTTACATCTACGAGACCAGCTAGCagctacactacatggccaaaagtatatatagtattttaCGACAAATAACAGAACACAGGCAACTGAATCTGTTCATTTGAAGATAGAATGTCTGTCAATAAGACTACCTGGGGTGCTGACAAACGTTAGATATTTTAAATTGAAACTTAGTTGGGTCAAAACAATCTACAGATTTGTTCCTTCCTTTTGAGGGACATTTCACAATTTTAACTTCATGTTAAAATTCGTgttatgttttgtagtaaaagaggaaaataagtgtttccaattagtaggcaatgcctaCTCGTAATTGGTTAAAAATCACATGATGCACACCGATGATGTCATTAGAAACActttttcttctctcttttttactacaaaacagaaacgcgccattttcacatatgttgatgttggggtgatgctggagatgaatatgaagtagaatttttttttttttacacttccCTTTAACTGTTTATGCATACTAGTACATGCATTTACAATGCTGAAACACCTGGACGTGCTTCATAAGCTAAGAGTGTTATATTCAGACACACGTAAAAATCAGTCAACTGACATCAAAGTCTCCCTATTTTAGATCACACACACATCTTATCCATTAGGATTTTTTCAAAGTTACTAATGAAGGTAATGTTTAGAGAGTACAGTGTGTCAGTGTTCAGGTCGACATCAGCCCACCTATATCTGCTGGAATGGACTCCTCCGTGCCTTTGTCCAGACACTCAACTGGCCGTCTGTGTGTTGAGCTCTGGTGTGCGCGTGCATTTATCCTTCCCAGGGCGGGCTACGTCGTCCGTCCACGTCCGTCTCTACGTGGTACAGCATGTCAGCCAACGTGTGTTCGATCACTGCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2459996 lncRNA upstream 1236 11001776 ~ 11002025 (+) True LOC110509607
TU2460011 lncRNA upstream 1490 11001305 ~ 11001771 (+) True G2151358
TU2460000 lncRNA upstream 20901 10981839 ~ 10982360 (+) True G2151347
TU2459966 lncRNA upstream 61521 10941520 ~ 10941740 (+) True G2151315
TU2459958 lncRNA upstream 73573 10929485 ~ 10929688 (+) True G2151307
TU2460072 lncRNA downstream 113915 11119349 ~ 11119550 (+) True G2151415
TU2460074 lncRNA downstream 117509 11122943 ~ 11123211 (+) True G2151417
TU2460078 lncRNA downstream 121829 11127263 ~ 11127564 (+) True G2151421
TU2460054 lncRNA downstream 130476 11135910 ~ 11139663 (+) True G2151397
TU2460081 lncRNA downstream 135320 11140754 ~ 11144758 (+) True G2151424
XM_021590598.2 mRNA upstream 31 10974442 ~ 11003230 (+) False LOC110509607
XM_036968136.1 mRNA upstream 97096 10701054 ~ 10906165 (+) False LOC110509315
XM_021590601.2 mRNA downstream 15636 11021070 ~ 11022671 (+) True LOC110509610
XM_036967250.1 mRNA downstream 20315 11025749 ~ 11044674 (+) True LOC110509611
XM_021590606.2 mRNA downstream 71031 11076465 ~ 11107444 (+) False LOC100136324
XM_021590608.2 mRNA downstream 71074 11076508 ~ 11112463 (+) False LOC100136324
XM_021590607.2 mRNA downstream 71355 11076789 ~ 11112463 (+) False LOC100136324
TU2459342 other upstream 541041 10461753 ~ 10462220 (+) True G2150729
TU2458634 other upstream 694182 10302688 ~ 10309079 (+) True LOC110509604
TU2457713 other upstream 1628749 9374000 ~ 9374512 (+) True G2149183
TU2457230 other upstream 1970966 8957803 ~ 9032295 (+) False LOC118945282
TU2460223 other downstream 354951 11360385 ~ 11366492 (+) True G2151555
TU2460909 other downstream 758790 11764224 ~ 11766351 (+) True G2152150
TU2461440 other downstream 1295358 12300792 ~ 12307438 (+) True G2152639
TU2462149 other downstream 1754446 12759880 ~ 12760490 (+) True G2153316
TU2463200 other downstream 2662855 13668289 ~ 13669170 (+) True G2154294

Expression Profile