RNA id: TU2460081


Basic Information

Item Value
RNA id TU2460081
length 3933
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id G2151424
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 11140754 ~ 11144758 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aataaagagagagcgagaaagggagtgggaaatagagagagatgaaagCAATTTAGTAATTTGCCTAAGAATATCTACTTAATTAATAGGTTCCCCGCTGTGTCATgcttacttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggttgattgTGTGTGTACCTTGCGTTTGGCGATGAGCTGTTCTCGGTAGCGGTGGGTGGAGTCTCCAGGGATTGTCCCCGCCCACAGGGACAAGCCCACCACCAGGTAGGCACATCCCATAATGCACAGCGGCAGGAAATAGTAAAGCAACACAACAGACAAATAGTACCTACACACATAGAGAGTTAGTTAGACACATACACAGATCTGTCAAAGTGAGCCCTTGAGCAAGGGCACTTAATCCTAGTTTCTCCAGTGTCGCCATTAATATTGGCAGATCCCTGGCTATGACCACaatctccgagggtgtctcagggagagtggaATATGCAAAAACTTTTCAAATTCACACATGCGTAAAAATGCACACCTATACAAATTCAGGGACCCGCCAAATTATTACACACAAAATGAGAAAGTCGGACAGGGATGTCACTCAGATAGTAGTCTAGTGGAACACAGAGTTCTGAAGTGCTTTCTTATCTCTGCGTCcgcctgtccacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacatactgtctgcTGATTGATTATCGGTCTCGCTACAGGGAGTAGCGAGACTCACTGAAAGATGCATGAAATCAATTAACTGAGagcaggagagaagagggggagggaagaggaagaggaaggagggaaggtCACGAGGATTTATCATCTCCTAGCCCCTAATTTTACCATCAGACTAACTACAGGGAGTCAGCTGCTTATGGAAATGACTTCAATTCCTTCAACACCTGAGACTAATGGGGATactaaataacacacacacacacacacacacacacacacacacacacacacacacacacatatactcatgagagagggagagggagagcaggtggAGGGCGAGAAAAACGTTAAgaacaagtgagagagagaggcagaaaaagTGGGGACAGGGAGAGCGAAAACAGTGAAACTAGTGATGCCGGGATTCAATCCGATCGTGGGTTACAGGCATTGCGGCTTTTAAAggcaatttccgattgagccgataTAAGCAGCGTTTACTGGGATTTACTGGGATTAATGGGATGTCCGCGAACGCCGCAACTTTTCCTTTAGAAGTGGAAATGCCCGTAATCGGCCCGAGACAACTAGGAAAAAGCCAGGACCATGTGCATCcacatgcacgtgtgtgtgtgtgtgtttaggaacTATAAAATCAATAACGTCAGGTAATTAGTAGAGTAAATTCTGTAATAAAGAATTTTTTAATAGCCAAAAAGATCACTTTGTGGTTCTTGGGCAATTGATAAATAAGGTTTTTCGAGTAAAAAATGTCAAGTTAATGAATTAACATGAACTAATGATACTTGAACTGATAATGAACTGATTAACAAGAACTGGTAATACTGCCATCGTCATCGAAGCAGAGGCAATGGACATGTAcattcactatatatacaaaagtatgtggacacaccttcaaattagtggattcgggtatttcagccacacctgttgctaacaggtgtataaaaccaagtacgcagccatgcaatctccatagacaaacattagcagtagaatggccttactgaagagctcagtgactttcaacgtccAATACTTTCAatgtccaacaagtcagttcgtcaaatttctgccctgctagagttgccccggtcaactgtaagtgctgttattgtgaagtggaaacatctaggagcaactaCGGCTCAGCCCCGAAGGGGTAGGCCACcccaaggaaaagggtggctatttgtaGAATCTCAAATGACACATAATGACACATATGTGTCTCAAATGACACATAGAATGTCAATGACACATAAGAAGATATTTACGAAGTTCCTAAGAGAACCACAAATTCCTAAGAACATTTTGAGGAATTGCGTATACGAACTATCTTATCTTCTTATTTTTTTCCTTAAGAAACTTCTTACGTTTTTTCGTTAGTAATGTTTTGTGAATCCAGCCCCAGGtgaccccatgaagctggttgagagaatgccaagagtgtgcaaagctgtcatcaaggcaaatggtggctactttgaagaatctcaaatatgttttgatttgtttaacacttttttggttactccatgattccatatgtgttatttcaaagttttgatgtcttcactattattctacaatgtagaaaataataaaaaataaagaaaaacttgtGACCGgttagtgtatatacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacataaagatataaaactgtatttttttgtgaagaatcaacaacaagtgggacactcatgaagtggaacgacatttattggatatttcaaacttttttaacaaatcaaaaactgaaaaattgggcgtgcaaaattaTTGGAGTAGATAGCccgagtgaatttacaaacgcaacCATAAAGTCTCGGTGGGCTAGTGACTGAAAACAGGCATAACTGAAACAAAAGTGTCTTTTAACTCTCCGTTCAAAGGTTGTCATGGAATTTCTCATATGCACCTTCATTTGTAACAAATACATGTTTCTATTATATGCCATTTGATATTAGTGGTACGTAGTGCCCTGTGTTTTGGTTAATCGTGTCACGTGACCtggatttgaacctttatttcaaGCTTTTTCATCAAACTGTCCCCTTTTCTTTTTGTATCAGACGGTCTGGCAACATCCTCAGACAATTGCTTACATTTTTGGTCTAATTCTCATTTGGAAAAGGCTTAAAATAAAAGGTTAAACGCCAAGTCATGTGACATGATTAAACAAAAGCGTTGGCTGCGGATCCGACTTTCTTTTTCTTCCAAACGCGGAAGGTCCCAAATCTTCTGTGCATATGGGGATCACGTTCTGCACGTGTGTTTCTTAATACCTGTACTTCACACTCACATTTTGTTGGTCTCCTTCCCTTCACATATCTCACTGTCAATCGTGAATGATAATTCTTCAAGTTTTACCGGTGAAACGGCCTTGCAGCATCAaccatttgatctcaatcagtttaaCAGGGATCTGCACATAAGATCGTATTGAGTTATAGGGCTTACAGTGTTGTTTTCAATGATGTACAGTGAAATAATTTTATAGCATAGggtgttaacaaactgtagcatTGCCCACCTGTGTCTTTTTCCTCGTGGCACGCAGTTGAGTTTTGGCCATATGAGAGAAAAATGTGGTGGTGTTTTTGTCTTCCAGTAACATTATACTATGCCTCTATATTCTGTTCGGTAGAACTATCATAGTATCATAGGTAGGTACTATCATTATGTGATCGTGCAGACATTGATTCCACTTTGATCTGACTTTATTAAAAGGAGAACCATTTGCCAGAGTAGCCTGTTCTCTACGATTATAGCAGAGTGTCCAAAGTACAAAATAAAGACATGCGCAGAAGCTTCAGGAACAAATTGTCTCCAGAGCCACACGGGGTCCTAACCATTATGACATTGAAAATCATCCCCTGTCATGACAGAGGACAGAGATGTGAACATTTGTGGGAGATTTGTTTCTGCTGAATTGGAGGGTCCACTCCAGCGTGGGCTTTGATGTCATATCAAACACATAGACAGAAATAGTGTTATGTAGTTTAAAAAATCCCCTTCTACGGCTGGTTGCACTATATGATGTTAGTGATTTTCAAATAGAATTAttcaagtatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2460054 lncRNA upstream 1091 11135910 ~ 11139663 (+) True G2151397
TU2460078 lncRNA upstream 13190 11127263 ~ 11127564 (+) True G2151421
TU2460074 lncRNA upstream 17543 11122943 ~ 11123211 (+) True G2151417
TU2460072 lncRNA upstream 21204 11119349 ~ 11119550 (+) True G2151415
TU2459994 lncRNA upstream 135320 11003261 ~ 11005434 (+) True G2151341
TU2460129 lncRNA downstream 86254 11231012 ~ 11231219 (+) True G2151466
TU2460131 lncRNA downstream 89718 11234476 ~ 11234704 (+) True G2151468
TU2460132 lncRNA downstream 90244 11235002 ~ 11235207 (+) True G2151469
TU2460099 lncRNA downstream 95015 11239773 ~ 11240666 (+) True G2151436
TU2460092 lncRNA downstream 97236 11241994 ~ 11243137 (+) True G2151430
XM_021590607.2 mRNA upstream 28291 11076789 ~ 11112463 (+) False LOC100136324
XM_036967899.1 mRNA downstream 23827 11168585 ~ 11204291 (+) False LOC110509317
XM_036967900.1 mRNA downstream 29634 11174392 ~ 11204291 (+) True LOC110509317
XM_021590612.2 mRNA downstream 62238 11206996 ~ 11215361 (+) True LOC110509615
XR_005040329.1 mRNA downstream 80318 11225076 ~ 11228621 (+) True LOC118945263
XR_005040511.1 mRNA downstream 165699 11310457 ~ 11313974 (+) False LOC110509616
TU2459342 other upstream 678534 10461753 ~ 10462220 (+) True G2150729
TU2458634 other upstream 831675 10302688 ~ 10309079 (+) True LOC110509604
TU2457713 other upstream 1766242 9374000 ~ 9374512 (+) True G2149183
TU2457230 other upstream 2108459 8957803 ~ 9032295 (+) False LOC118945282
TU2460223 other downstream 215627 11360385 ~ 11366492 (+) True G2151555
TU2460909 other downstream 619466 11764224 ~ 11766351 (+) True G2152150
TU2461440 other downstream 1156034 12300792 ~ 12307438 (+) True G2152639
TU2462149 other downstream 1615122 12759880 ~ 12760490 (+) True G2153316
TU2463200 other downstream 2523531 13668289 ~ 13669170 (+) True G2154294

Expression Profile