RNA id: TCONS_00056083


Basic Information

Item Value
RNA id TCONS_00056083
length 1435
RNA type mRNA
GC content 0.42
exon number 2
gene id XLOC_029000
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 40402017 ~ 40407853 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aaacaggataaagtgtccaaacacagagaaaaaaatcCTGCTGAAGcaactgatctccacactgttataaaaatggcgtttattaaagaggagagtgaagatgtgaagattgaagaaacattcacagtcaaacaggaagatacgcaggaacaaacagacctaattaaagactacgatgagagtaaagaggaggaacatcatgtcaaaattgaggataaaactcatttagagactgatggtattttaaaagtGAGAGACAAGAGTTGTTTAACCTGCacacagtgtggaaagagtttggcaagcaaaagcaaactaaagactcacatgaggattcacaatgaagagaaaccattcacatgctatCAAtatgggaagagtttcagcaaatcatcactTTATAGACACAAGAAGATCCACACcggtaaaaaaacatttacttgcactcagtgtgggaagagttttaactgctcatcacaccttaatcaacacatcaggatccacactggagagaaaccattcagatgcactcagtgtgggaagagttttaactgctcatcacaccttaatgaacacatgatgatccacactggagagaaaccattcacgtgcactcagtgtgggaagagttttagcaaatcatcgtcgctttatagacacatgaagatccacactggagaaaaaccattcacttgcactgagtgtaggaagagtttcagccaatcatcatcccttaatgtacacatgaggatccacactggagagaaaccattcacatgcactgagTGTGGGACCAGTTTCAGTAAATCATCATCGCTTTATacacacatgaagatccacaccggagaaaaaCCTTTCACTTgcactgagtgtgggaagagtttcatccaatcATCATGCCTTAAtgtacacatgaggatccacactggagagaaacctttcacatgcactcagtgtgggaagagtttcatccactcatcacaccttaatcaacaccttatgattcacactggagagaaaccattcaaatgcactcattgtgggaagagttttagccaatcataccttaaaaaacacatgaagattcacactggTGTAAGAGAGTACGTGTGcttggagtgtgagaagacttttattacagctgcagaattgaaacggcaccagaggattcacactggagaaaaaccgtacaagtgttcacactgcagtaagaggtttactcactcaggaaccctgaaaacacatgagaggattcacactggagagaaactgtacaagtgttcacactgcagtaAGAGGTTTGCTCACTCAGGAACCCTGAAAGCAcatcagaggattcacactggagagaaactgtagACATGATCAGTGTGTACTAGGGTTGGttaccgaaacccggtgccattttAGCACCGCTACCTTGGTAACCGGTATGTat

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000151890

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058275 lncRNA downstream 382314 40018973 ~ 40019703 (-) True XLOC_028998
TCONS_00058274 lncRNA downstream 393142 40006495 ~ 40008875 (-) False XLOC_028997
TCONS_00056080 lncRNA downstream 393142 40007471 ~ 40008875 (-) True XLOC_028997
TCONS_00056075 lncRNA downstream 572198 39829175 ~ 39829819 (-) True XLOC_028995
TCONS_00057390 lncRNA downstream 688067 39712778 ~ 39713950 (-) True XLOC_028994
TCONS_00056084 lncRNA upstream 80711 40488564 ~ 40497140 (-) True XLOC_029001
TCONS_00058276 lncRNA upstream 89964 40497817 ~ 40501755 (-) False XLOC_029002
TCONS_00056085 lncRNA upstream 89964 40497817 ~ 40503730 (-) True XLOC_029002
TCONS_00058277 lncRNA upstream 144306 40552159 ~ 40598742 (-) True XLOC_029004
TCONS_00058278 lncRNA upstream 304009 40711862 ~ 40937754 (-) True XLOC_029006
TCONS_00056081 mRNA downstream 37128 40357513 ~ 40364889 (-) False XLOC_028999
TCONS_00056082 mRNA downstream 37585 40358119 ~ 40364432 (-) True XLOC_028999
TCONS_00056077 mRNA downstream 393438 39992253 ~ 40008579 (-) False XLOC_028997
TCONS_00056079 mRNA downstream 393918 39992386 ~ 40008099 (-) False XLOC_028997
TCONS_00056078 mRNA downstream 393918 39992386 ~ 40008099 (-) False XLOC_028997
TCONS_00056086 mRNA upstream 117222 40525075 ~ 40536045 (-) False XLOC_029003
TCONS_00056087 mRNA upstream 118161 40526014 ~ 40536509 (-) True XLOC_029003
TCONS_00056088 mRNA upstream 146851 40554704 ~ 40589466 (-) False XLOC_029005
TCONS_00056089 mRNA upstream 148826 40556679 ~ 40589579 (-) False XLOC_029005
TCONS_00056090 mRNA upstream 155462 40563315 ~ 40586979 (-) False XLOC_029005
TCONS_00056071 other downstream 932308 39451635 ~ 39469709 (-) True XLOC_028992
TCONS_00056068 other downstream 1037802 39364038 ~ 39364215 (-) True XLOC_028989
TCONS_00056067 other downstream 1044232 39357666 ~ 39357785 (-) True XLOC_028988
TCONS_00056047 other downstream 2054797 38335552 ~ 38347220 (-) False XLOC_028976
TCONS_00056041 other downstream 2164313 38237604 ~ 38237704 (-) True XLOC_028973
TCONS_00056095 other upstream 490004 40897857 ~ 40897963 (-) True XLOC_029011
TCONS_00056096 other upstream 490531 40898384 ~ 40898490 (-) True XLOC_029012
TCONS_00056097 other upstream 497915 40905768 ~ 40905874 (-) True XLOC_029013
TCONS_00056098 other upstream 499502 40907355 ~ 40907461 (-) True XLOC_029014
TCONS_00056099 other upstream 504010 40911863 ~ 40911969 (-) True XLOC_029015

Expression Profile

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