RNA id: TCONS_00058276


Basic Information

Item Value
RNA id TCONS_00058276
length 3939
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id XLOC_029002
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 40497817 ~ 40503730 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gacagccaaacaggtttggaacaagtgaatggtgagtaaatggtgatagAATTGTCATTCTTAGACGAACTGTCCCTGTAATTTTGGGTAggataaaaaatacattcaaaggAGTAGCAGAATATAGGCATTCTTATGGGTTTAGTTCTAGttcaattaaacaaacattttataaaaaggaGTAATCATACATTTATTAAGCTTTTTATACTGCTTCTAGGCATGACAATGACAAAACTGACGTTACCTGTTTTATCTTTTCCCTAATTACAGAGTTCTCTACAGTCAACTGACAACTACATAACACTTACACATTCTGTCCCTCAAAAATAAGGTACGTGTAATTATTGTGACAGAACTACTGGTCATCAGGAAAGTGGTTCTAAAATTTCAAATCTTGGAGACTCATAACACTGCACATTCTGGATGTCTCCCATATAATATGCACCAATTAGTTTACCAAGCTTCAGTTTTATAAAGTTCAATTAAATGTAAGCGTACATGTAAGCAGTGTgatgtaaagcaggtcgcacaccagaagcgccgcgacacagcgcgcacatgacagtttaaagcatCACACActagacgcgcacattcgaatgatatttaacattaaactaatcagatgCCGCTTTGTAGCGAGGCTGAAAAATGAACTTCGTCCTGTGCCGTGGCGCCGCCGACTTGCAGCACCTGTGTGTGTATTCTGAtcgaaacctatgtttagaattctaaaatgcatggcgctgcgtggcgcgctgcggagcggcgcttctggtgtgcgacctgcttaagggtCTTAAAGTACTGAATTTCAAAACCAATGCAGGCTTAGCATGTTAGGGcaatgcattgtgtgtgtgtgtgcattacgGATTGTAAAAAAACAATCTTACTGGACACAACAGGAGAAAAGCCAAAGCCAAGGTGGACAAACAGCTTTATTCAATGCATGTGTTATAAGCATCACTATTGAGGGAACAGTATGGTGGCATTGACAAGCAGCACTGTTGAAGACGGCACTGACTTCTTGGACTGTTTGTCCCATGTTAATGAGACTGAATGCAGTATCATCCTGGCAAGTGCTTCATAAACGAGTCAATCTGACTAGTTCAAGTCCCCTCAATGATGACTTTGACAAGAtgggaaacagaaaaaaaaaaaaattaacacatgcATCACTAAATGAATTACTCATAATCATTCACAATTACAATCCGAGTCTGCCAAAAGATACAAGGACAATATTAGGTAAAGTGCGTTCAAAGAGAATAGCCTTCTTTTTGCAAATGAGTTCTCTTTGAACGCACAGGGTCAGTGATATACTTTTGGTTCAATGGCATCCATTTCAAGGGTCCTCTATGACAACATGTACATTTTAAGGAAGATAAAAATTTTAAGTTCCAGGTGAGCATTGATGGTCTTCCTCTCTACAAGAGTTCATTTGCTCAATGCTGGCTCAGTCTAGTAGAAGTTTAAAACTTGGTGCAGGGGGAACATGTGCCAATAGATTTATTGTGGGCTGAAGGTACTGTAAAACTAGCTCCCTGAATAAGTATCTCGAAGACCTAATCTCTGAAatcaaagagttaaaaaaaatggcTTTGAATTTGAATGACTAAAGTTAACATTCAAGTTTGCTTTTGCAACATGCTTTTCTAAAATGGCCAACCAGGTTACCATGGgtgtgaaacatgtattcaggATGGTGTGCACCTGGAAAACAGGATGGCATTCCTCAGAAATGTACCTAGAGTGAGTATGCCCATATACTCTGAAACTGGACCAGGCAAACCATTTGTCTATATTGGCAGAAAGGTTGCAAAGCTGCAaaacataatttcagaaaagcatgGCATTTACATGGTCTACACCACGTTCAGCAAACACTAACTCCTTTTTGACTATCCCCACGCTTCCATCCTCCACACTTGGCATCTACCTACTGATGTCATGTCAGGACCAATCCATCTCTGCAAGATTGAAAATATTGAAATGAAAGCTTTTTTTAGTCCCTTGcagaaattattttgtttcagtttaaaCTTTACACACATAGTATCTATctatttccacattttttttttttttacatatactgtatagtgCGAGTATAATTATTGTGCAAGATGAtattctgatcatattttttcctaGAGCATTTTGAAAATTGTAAACCTTAATCACTACCAGGGCTtgatattgacttttttttatcaCCAGTCACTGTGGCTTGTAGTTTCCAaggttactagccacttgcctttttcactagccacaattttgttgttgggaaaatatattttatatgcagaaAATTGActtgcaagcaaaagaaagcaggtgaaaaacaaacCATGTGTGATAATGAAATATTAATCATGTGCACACAGTTAACATTAGgcacattaataatctgttcaaacaaTAGTTAAAGTGGCAATCACTGCTGCTTACAAAGACCTGTTTTTAAATCTAAAGCTCTTGAAAGCAGAAGGACTGTGGATGCACGACAATtacttttgtccagtctatttcaaataGAATCCATCACACCAGTTTCATTTCCAAGCAGGATTGCTACATGCAAGGAAACGGTAGTGCACAAGTATTTTCAACACTCGGCTCTCAAAAACATCTCTCAGTGAGTAAGAATAGCCTGTGTCTCACAGTGTGTATGATCAAGCTCTCATTTGGTATTCATCTTTTGTTTTGCATAaacacagttgtttttgtcaatcatgctgcttctcgattctgaAATCTCATTTGCTGTTCCACTCATTACTGTGTATATcactaattttgaaaaaaataaatataattttttttaaatcacatttgcatgcatattgataaacggtaaaaaactgaaattataatatttagtGATAAGCCAGCATTGGCCTGGTCAGGACActgacaatcctgtctactgtcccaaaaactggaccatccttattgttgaaccctgcttttaagaaaactacaattaaaaaattattttcaaccagccaaagtggctagtgggaatGGCAGTCTttacccgccacagctgaaatctacctgcatttggtggTTTGGCGAGTATTAATGTCAAGCCCTAATCACAACTATAACCAATATGTAATATTATATGAAGGCAGAAAGTGAAAATAGCTCGATTCAAATGATCCAAAATAGTTGTCATTACTTTATTTTGCAATTTCTAGTATTGCCTTCTTCTCACCgtcatttaataattttgcaaCTTTTCAGTCCAAGTTATATTTTTACCAGTAAAACACctgaatttaaagcatttttacttTGAGTGTTGTCAGAAAATTATATATCAATAATGAATGATGAATACAAAAGTAGTAGTGGTTCTTAAGATTGATGTGGTCTGGAATTGGTAATATATGCTTGGGAAAAAATGTATCTGAATATTAACTTGCATCATTATTTTGCATGAAATGTATTGTGTATTTGAATCATGCACATAAACAACCGAAATTTAATATGTGTCATTTAACATTATGGGGCTCTAGGTTCTTGcagcttaaaaaaaatgtacctgATAGTGGAGTTCATTCACGAAGGGAGTACCGGACCTGTCGCCAAGTCTTGGTACTCAGAGGGTCACTCGTGGTGGCCTCCATACAAGAAGATAGACAGGGTATTGAGGAGTGTCCGGTTGATGGAGGCACCACAACCAGATAAAGGTTGGACCAAGCATCAGGCCAGAATTCTACACGAGTCAGGTACACAGAAgtacattgtaaataaacaatattaaacaaaGGATAAATTCAATAATATATGACGTTCCATAGACTACTGCATTCATGAATTGTTACATACTTTATTTCTTTCAGCATCTTTTGACAAGATTTCAAAGAAATGGAAACAGGCATGCTACACATCTGACATCTCGGAATCTGAAATGCCTGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00056084 lncRNA downstream 677 40488564 ~ 40497140 (-) True XLOC_029001
TCONS_00058275 lncRNA downstream 478114 40018973 ~ 40019703 (-) True XLOC_028998
TCONS_00058274 lncRNA downstream 488942 40006495 ~ 40008875 (-) False XLOC_028997
TCONS_00056080 lncRNA downstream 488942 40007471 ~ 40008875 (-) True XLOC_028997
TCONS_00056075 lncRNA downstream 667998 39829175 ~ 39829819 (-) True XLOC_028995
TCONS_00058277 lncRNA upstream 50404 40552159 ~ 40598742 (-) True XLOC_029004
TCONS_00058278 lncRNA upstream 210107 40711862 ~ 40937754 (-) True XLOC_029006
TCONS_00057391 lncRNA upstream 255088 40756843 ~ 40757716 (-) True XLOC_029007
TCONS_00057392 lncRNA upstream 324067 40825822 ~ 40828360 (-) False XLOC_029008
TCONS_00058279 lncRNA upstream 324119 40825874 ~ 40827847 (-) True XLOC_029008
TCONS_00056083 mRNA downstream 89964 40402017 ~ 40407853 (-) True XLOC_029000
TCONS_00056081 mRNA downstream 132928 40357513 ~ 40364889 (-) False XLOC_028999
TCONS_00056082 mRNA downstream 133385 40358119 ~ 40364432 (-) True XLOC_028999
TCONS_00056079 mRNA downstream 489718 39992386 ~ 40008099 (-) False XLOC_028997
TCONS_00056086 mRNA upstream 23320 40525075 ~ 40536045 (-) False XLOC_029003
TCONS_00056087 mRNA upstream 24259 40526014 ~ 40536509 (-) True XLOC_029003
TCONS_00056088 mRNA upstream 52949 40554704 ~ 40589466 (-) False XLOC_029005
TCONS_00056089 mRNA upstream 54924 40556679 ~ 40589579 (-) False XLOC_029005
TCONS_00056090 mRNA upstream 61560 40563315 ~ 40586979 (-) False XLOC_029005
TCONS_00056071 other downstream 1028108 39451635 ~ 39469709 (-) True XLOC_028992
TCONS_00056068 other downstream 1133602 39364038 ~ 39364215 (-) True XLOC_028989
TCONS_00056067 other downstream 1140032 39357666 ~ 39357785 (-) True XLOC_028988
TCONS_00056047 other downstream 2150597 38335552 ~ 38347220 (-) False XLOC_028976
TCONS_00056041 other downstream 2260113 38237604 ~ 38237704 (-) True XLOC_028973
TCONS_00056095 other upstream 396102 40897857 ~ 40897963 (-) True XLOC_029011
TCONS_00056096 other upstream 396629 40898384 ~ 40898490 (-) True XLOC_029012
TCONS_00056097 other upstream 404013 40905768 ~ 40905874 (-) True XLOC_029013
TCONS_00056098 other upstream 405600 40907355 ~ 40907461 (-) True XLOC_029014
TCONS_00056099 other upstream 410108 40911863 ~ 40911969 (-) True XLOC_029015

Expression Profile

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