RNA id: TU2461108


Basic Information

Item Value
RNA id TU2461108
length 591
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G2152321
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 11789510 ~ 11790126 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcgcaaagttcaagggggccgaatacttttgcaaggcactgtaagtacaaTTAGTACTGTATGCTGCTCTGAAATTGCTCatcaaaatatttatatattcttaattccattcctttactttagattgtgtgtatggttagatattactgcactgttggaactagaaacacaagcatttcgctacacccgcaataacatctgccctaacaagtgtatgtgacaaatacaatttgatttgatttttaatgATGCTACACCAGGACAGTACAGAGTGCTTAAATAGCTTAAATAaataggtcacacacacacacacacacacacagaagcgcACTAAAAGGGAAAACAGCAAGAGAGCATATGACACCAATACCTACCTAATTCAATTGTGTGTTCGTGTAAGCGTTGGACATCAAGACCTCTTAAAATATTTGTCCTCTGATGACTCGCAAGTAAACAGTTACACAAGTCCACACTCACTGTGCTGGCAGGTCCTGCCAGTGTATTCTCCAGGACACACACACGTGTAGTTGGCCTCCCGGTCTGTACACACACCTCCGTTCCTGCACGGCCCACTCTCACACTCATTCACAt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2460874 lncRNA downstream 54508 11734772 ~ 11735002 (-) True G2152122
TU2460872 lncRNA downstream 58197 11731078 ~ 11731313 (-) True G2152120
TU2460863 lncRNA downstream 62839 11726464 ~ 11726671 (-) True G2152111
TU2460860 lncRNA downstream 65652 11723519 ~ 11723858 (-) True G2152108
TU2460858 lncRNA downstream 67808 11721498 ~ 11721702 (-) True G2152106
TU2461085 lncRNA upstream 5095 11795221 ~ 11796536 (-) True G2152298
TU2461147 lncRNA upstream 104583 11894709 ~ 11895204 (-) True G2152360
TU2461176 lncRNA upstream 150511 11940637 ~ 11941328 (-) False atg10
TU2461184 lncRNA upstream 164406 11954532 ~ 11975619 (-) True G2152389
TU2461222 lncRNA upstream 215949 12006075 ~ 12006339 (-) True G2152426
XM_021590624.2 mRNA downstream 134400 11644033 ~ 11655110 (-) True LOC110509627
XM_021590622.2 mRNA downstream 264296 11523453 ~ 11525214 (-) False LOC110509625
XM_036968069.1 mRNA downstream 279568 11503158 ~ 11509942 (-) True LOC118945324
XM_021590620.2 mRNA downstream 321453 11464844 ~ 11468057 (-) True LOC110509622
XM_036967339.1 mRNA downstream 337499 11448974 ~ 11452011 (-) True LOC110509320
XM_036967201.1 mRNA upstream 63203 11853329 ~ 11884994 (-) False vcanb
XM_036967200.1 mRNA upstream 63203 11853329 ~ 11884996 (-) True vcanb
XM_036967303.1 mRNA upstream 95565 11885691 ~ 11915884 (-) True xrcc4
XM_036968101.1 mRNA upstream 150504 11940630 ~ 11944005 (-) False atg10
XM_036968099.1 mRNA upstream 150504 11940630 ~ 11944084 (-) False atg10
TU2460859 other downstream 67031 11722072 ~ 11722479 (-) True G2152107
TU2460707 other downstream 264358 11456618 ~ 11525152 (-) True LOC110509625
TU2460556 other downstream 545450 11241994 ~ 11244060 (-) True LOC100135966
TU2460472 other downstream 795631 10993166 ~ 10993879 (-) True G2151771
TU2460429 other downstream 820209 10951249 ~ 10969301 (-) True ttll11
TU2461170 other upstream 151336 11941462 ~ 11944153 (-) False atg10
TU2461172 other upstream 151336 11941462 ~ 11944153 (-) True atg10
TU2462005 other upstream 859050 12649176 ~ 12649495 (-) True G2153174
TU2462547 other upstream 1297327 13087453 ~ 13091356 (-) True G2153683
TU2463277 other upstream 1938707 13728833 ~ 13731096 (-) True G2154361

Expression Profile