RNA id: TCONS_00056086


Basic Information

Item Value
RNA id TCONS_00056086
length 1089
RNA type mRNA
GC content 0.42
exon number 7
gene id XLOC_029003
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 40525075 ~ 40536509 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atggcgtttattaaagaggagagtgaagatgtgaagattgaagaaacattcacaatcaaacaggaagatctgcaggaacaaacagAGAGAACGAAAAAACCCAAGCAAAAGCCTTGCCATAATTGTGGGGCTTTAAATGTTTCAAACTGCAAAACGTGCAGAAATTGTTTTGCTgccattgctttaaaagcaatcatcatggcaaaacaaaaaaacattgaggAGTCGTCATGGGcagcaaacaacaaaaaacacaggAATTCTGCCCGTGTTGTAGATTCTGCCCGCACTGCTgTTAAGAAATTGGAAATGCTGGGCTACAAGCCATTGTTGTTTAtttcaaaagaaaagaaaaaaggattCAACGCAGAGCTTATAACAACAATGGGTCCATTTGGAGAGGGACCACAGCAAAAAATTATAGATAAAATGACCAGCCTGTACgaagtttttattaaaaaTTTCCAGAGGTTTCAGAATTTGGCTGCAACAGACCCTGATGTCTGCCAAAACCTACCATCATCCGTTTCTCCTCCAGCTTCTATTCCTCCATCATCTTTCTCAAGCCTTCCTCCTCCACCATCTTTCCCAAACCTTTCTCCTCCACAAACTTCCTCCAGCTTTTCTCCTTCATCTGCTGTTCTTCTACCATCTTTCCCAAATCTTCCTCCTCCACAATCTTCATCCAGCTTTCCTCCTTCATCTGCTCCTCCATCTTTATCTTCCAACCTTATTCCTCCAACTAATTCCTCAAGCTTCAGTCCTCCTACCTCCTCTTACATTACCCCTCTTCCACCTGCCTCTTCATACAAAACACTTCTTGCTCCACCGCCTACTTCCCTCACTACTACACCTACTTCCTCTCTATCAAGTCCTGCAGTCCAGTGCATGACTACAGATTCCGGTGATTCAGatttatccTCCAGAGAAAGTGTCATAAAAGGGGGCAAACAAAAGAAGTGGATCTACAAACAAGCAGAATGCCAAGTACATTCCAACCAGAAAACCTTTCCTTATGACAGGATTGTGAAAAGGAGGATTGGGATGAAATGGAAAGACTCCTGGGAACCATTAAATCACTTTTTGTAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000144513

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00056085 lncRNA downstream 21345 40497817 ~ 40503730 (-) True XLOC_029002
TCONS_00058276 lncRNA downstream 23320 40497817 ~ 40501755 (-) False XLOC_029002
TCONS_00056084 lncRNA downstream 27935 40488564 ~ 40497140 (-) True XLOC_029001
TCONS_00058275 lncRNA downstream 505372 40018973 ~ 40019703 (-) True XLOC_028998
TCONS_00058274 lncRNA downstream 516200 40006495 ~ 40008875 (-) False XLOC_028997
TCONS_00058277 lncRNA upstream 16114 40552159 ~ 40598742 (-) True XLOC_029004
TCONS_00058278 lncRNA upstream 175817 40711862 ~ 40937754 (-) True XLOC_029006
TCONS_00057391 lncRNA upstream 220798 40756843 ~ 40757716 (-) True XLOC_029007
TCONS_00057392 lncRNA upstream 289777 40825822 ~ 40828360 (-) False XLOC_029008
TCONS_00058279 lncRNA upstream 289829 40825874 ~ 40827847 (-) True XLOC_029008
TCONS_00056083 mRNA downstream 117222 40402017 ~ 40407853 (-) True XLOC_029000
TCONS_00056081 mRNA downstream 160186 40357513 ~ 40364889 (-) False XLOC_028999
TCONS_00056082 mRNA downstream 160643 40358119 ~ 40364432 (-) True XLOC_028999
TCONS_00056077 mRNA downstream 516496 39992253 ~ 40008579 (-) False XLOC_028997
TCONS_00056079 mRNA downstream 516976 39992386 ~ 40008099 (-) False XLOC_028997
TCONS_00056088 mRNA upstream 18659 40554704 ~ 40589466 (-) False XLOC_029005
TCONS_00056089 mRNA upstream 20634 40556679 ~ 40589579 (-) False XLOC_029005
TCONS_00056090 mRNA upstream 27270 40563315 ~ 40586979 (-) False XLOC_029005
TCONS_00056091 mRNA upstream 27270 40563315 ~ 40589124 (-) True XLOC_029005
TCONS_00056092 mRNA upstream 310438 40846483 ~ 40854534 (-) False XLOC_029009
TCONS_00056071 other downstream 1055366 39451635 ~ 39469709 (-) True XLOC_028992
TCONS_00056068 other downstream 1160860 39364038 ~ 39364215 (-) True XLOC_028989
TCONS_00056067 other downstream 1167290 39357666 ~ 39357785 (-) True XLOC_028988
TCONS_00056047 other downstream 2177855 38335552 ~ 38347220 (-) False XLOC_028976
TCONS_00056041 other downstream 2287371 38237604 ~ 38237704 (-) True XLOC_028973
TCONS_00056095 other upstream 361812 40897857 ~ 40897963 (-) True XLOC_029011
TCONS_00056096 other upstream 362339 40898384 ~ 40898490 (-) True XLOC_029012
TCONS_00056097 other upstream 369723 40905768 ~ 40905874 (-) True XLOC_029013
TCONS_00056098 other upstream 371310 40907355 ~ 40907461 (-) True XLOC_029014
TCONS_00056099 other upstream 375818 40911863 ~ 40911969 (-) True XLOC_029015

Expression Profile

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