RNA id: TU2461267


Basic Information

Item Value
RNA id TU2461267
length 290
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G2152470
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 12038654 ~ 12038943 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attccaagacatttaaatgttccccTTAATCCACTCAAGTGTTAATTTAGCAGTATGAAATGGGTCATtctcctgctggaaggtgaacctccatcccagtctcaaatctctggaagactgaaacaggtttccttcaataatttccctgtatttagcgccatccatcattccttcaattctgaccagtttcccagttcctgccgatgaaaaacatccccacatcatgatgctaccaccaccatgcttcactgtggggatggtgttctcggggtgatgagaggtgttcggtt

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2461248 lncRNA downstream 12094 12026348 ~ 12026560 (-) True G2152451
TU2461231 lncRNA downstream 18667 12016682 ~ 12019987 (-) True G2152435
TU2461222 lncRNA downstream 32315 12006075 ~ 12006339 (-) True G2152426
TU2461184 lncRNA downstream 63035 11954532 ~ 11975619 (-) True G2152389
TU2461176 lncRNA downstream 97326 11940637 ~ 11941328 (-) False atg10
TU2461268 lncRNA upstream 244 12039187 ~ 12039474 (-) True G2152471
TU2461308 lncRNA upstream 25714 12064657 ~ 12064876 (-) True G2152511
TU2461311 lncRNA upstream 27238 12066181 ~ 12066425 (-) True G2152514
TU2461312 lncRNA upstream 28331 12067274 ~ 12067498 (-) True G2152515
TU2461655 lncRNA upstream 66312 12105255 ~ 12105457 (-) True G2152834
XM_036967790.1 mRNA downstream 72350 11961963 ~ 11966304 (-) True zcchc9
XM_036967791.1 mRNA downstream 72362 11961963 ~ 11966292 (-) False zcchc9
XM_036968096.1 mRNA downstream 92829 11940630 ~ 11945825 (-) False atg10
XM_036968095.1 mRNA downstream 92886 11940630 ~ 11945768 (-) False atg10
XM_036968100.1 mRNA downstream 92991 11940630 ~ 11945663 (-) False atg10
XM_021590654.2 mRNA upstream 87866 12126809 ~ 12127782 (-) True LOC110509644
XM_036968019.1 mRNA upstream 111423 12150366 ~ 12159825 (-) False fgfr1b
XM_021590656.2 mRNA upstream 111423 12150366 ~ 12178844 (-) False fgfr1b
XM_036968018.1 mRNA upstream 111423 12150366 ~ 12178844 (-) False fgfr1b
XM_036967297.1 mRNA upstream 156155 12195098 ~ 12201043 (-) True march5l
TU2461170 other downstream 94501 11941462 ~ 11944153 (-) False atg10
TU2461172 other downstream 94501 11941462 ~ 11944153 (-) True atg10
TU2460859 other downstream 316175 11722072 ~ 11722479 (-) True G2152107
TU2460707 other downstream 513502 11456618 ~ 11525152 (-) True LOC110509625
TU2460556 other downstream 794594 11241994 ~ 11244060 (-) True LOC100135966
TU2462005 other upstream 610233 12649176 ~ 12649495 (-) True G2153174
TU2462547 other upstream 1048510 13087453 ~ 13091356 (-) True G2153683
TU2463277 other upstream 1689890 13728833 ~ 13731096 (-) True G2154361
TU2463349 other upstream 1741716 13780659 ~ 13782254 (-) True G2154418
TU2463583 other upstream 1961582 14000525 ~ 14010167 (-) True G2154637

Expression Profile