RNA id: TU2462547


Basic Information

Item Value
RNA id TU2462547
length 3883
RNA type TUCP
GC content 0.42
exon number 2
gene id G2153683
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 13087453 ~ 13091356 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAAAATTACAATTGTGTTTAAGCATGTGGCATAATCAACATTTAAAATTATTACTCAAACCTTTCTCCCCTTTCAAACTGTAGAAGTTCAGATCATAAATGAAACGCTATAAAGCCAACTCACTCAGACACCCCATTTAAGTCTCCCAAAGATACTAGAACCAACAACAAGCCCTTAAAGGTCGACGTTgggcaaaaactgaaaaataatgGCTTTAAACTGTATAACTGATCACTGCGCCATCATACCAGGTCAATGCTTAACTTAAATAATTGGATGAATAAGATATTTGGCTAAAGAAGTGTTCTTACCAATCTCTACAGCTTCCATCCAAAAACAAATCGGTCGCAGCGCACGACACATCAACAAACCACCAAAGGCACACCCCATTACTGTTTGAGAAAGGGGCAGTGTCTGACCACTTTTCGTGCCCAAAGTTGACCTTTAAATAGTGTTCTTCACATATACATATAGTTATAATTTTTTATACATTATCACAGATTTTTGGCAATAGTAAATCCCACAAAAGTACCGTAGTTAGTTACCATTGATCCATATTTGTACCAAAGGCAACGTCAACAAAATTCACATTCTGTACAGGAAAATATTTTGGCAAAAGGAAAGAAAGTCTCTCTGCAATCCTCACCTGCTATGCACAAATTACTATAAATCCATTAGCTTTTTAAATAGTTCAAACATATTGCCAGTCTTTTTTTCTCATACCTAAAAAAAACCAACCAACCTTGATACCCACATAtcagacataaaaaaaaaagacaagagTAAGTGACAAACATCTTTGTTTGATACAATTCTCATTAAAATCTGTGGTTATAATATATCTGGAATAATAAATAAAGGGAAAACACCATGAACCAATCAATCATTGCACTTCCAAGTCGCAACAGAAACAAGGGGAGGGaaaataaagaagaaaaaaaaatcattgtTTTGGATTCACCCAAACATACAATTCCATTTTCACAAGAGCACTATAAATGTGTTATATTAGTATTTGTAATAAAAAAGTTTATAGAAAGGAAAGACTTCTGAGCCATACCCCAGCGTCTGGGCTTGGAGTAGCATTGTCTCTCCTAACATTTCCCAGAAGAAGAGGAAAGTACCTGAAAGTGAGACTTCAACATGTTTATTTTTCTTCTGGATGCTCCCTCTTTGTATTGCTCATTTAGTATAGAAGGTTGTCCAAGATCTGTTCTCAATCTTGGACAATATGCCAGATTCTTCTTCAATCTCCATGGTAACATTGTGATAGGAGGGAGGACATTGGGAGCGTTTCATAAAGTGACTGGGAGGTCATctgtctgacctctgacccttagTCCTAGTCCAGTGTCAGATGGGGCCTCAGAGCGAACGGCCATAGAGTCCAGTGAAACGCTGTAAAGACCAGTGAGTCTGACTCTCCATTTCCATGACATCTGATCATCTGACTGTCCTTTTGGCTGACATTGATATCTCCATAGTAAACAGAGCAATAGTAGTACTGTAGTCATAACGGAATAAGAAACCAGTAGATGTAGAATAGTTCAAAAACAGACCTGAATGTGTGGCGACGACAGCGAAGAGTAAACAATAATAGCAAAACATCCACCAGCGAACGACTCTGGATGACTGAACTGAACTTTGCACCaaataaaatgtagaaaatgaGCGTTTCCTTTTACCTTTTCAAAGTCTGTGATGGAAGAAAACCCTGAAGCAAAATAACCGACCATATTCAACATCCCCTCCTATGGAATGCTAGCCAGACTCcgcaattttttgttgttgttgaaaatacagtgcattcggaaagtattcagaccccttggctttttccacatgttgttacgttacagccttattctaaaatggattatataaaAAAtgttactcatcaatctacacacaataacccataataacaaagcgaaaaaAATATTGGCAaatttggcaaatgtattaaatataaaaaacagaatttacataagtattcagaccctttgctatgagactcaaaattgacctcaggtgcatcctgtttccattgatcatctttgagatgtttctacaacttggagtccacctgtggtaaattcaattgattggacatgatttggaaaggcgcacacctgtctatataaggtcccacggttgacagtgcatgtcagagcaaaaaccaagccatgggttcaaaggaattgtccgtagagctccgagacaggattgtgtcgaggcacagatctgggaaagggtaccacaaaatgtctgctgcattgaaggtccccaagactcttcctagagctggccaccctgccaaactgagcaatcaggggaggagggccttggtcagggagaacccgatggtcactctgacagagctccacagtgcctctgtggagatgggagaaccttctagaaggacaaccgtctctgcagcactccaccaatcaggcctttatggtagagttgccagacagaagtctctcctcagtaaaagcacatgacagcgcacttgaagtttgccaaaaggcacctaaaggactctcagaccatgaaaaacaaaattatctggtctgatgaaacccagattgaactctttggcctgaatgccaagtgtcacgtctggaggaaacctggcaccatccttacagtgaagcgtggtgatggcagcatcatgctgtggggatgtttttcagcggcaggtactgggagactagtcaggattgaaagaaagatgaatggagcaaagtacagagagacccttgatgaaaacctgctcaagagctctcagaacctcagactgggccgaaggttcatcttccaacaggacaacggccctaagcacacagccaagacaacacaggagttgtttcgggacaagtctgaatgtccttgagtgaacctgggctcgaacatctctggagacctgaaaatagctgtgtagtgaccctccccatccaacctgacagagcttgagaggatctgcagagaataatgggagaaactccccaaatacaggtgtgccaagcttgtagtgtcatacccgatttgaaggtgcttcaacaaagtactgagaaagggtctgaatacttacgtaattgtgatattcattttttttgcaaaaaaattctaaaaacctgtttttgctttgtcattatgtggtattgcatgtagattgatggcgaaaaaaaaaaatattttttttagaataaggctgtaacctaacacaatgtggaaaaaaatcaaggggttctgattactttccaaatgcactgtaaatatttGAGCAGTTTGTAGTCAGAGCGTAAATAACATTCCacagggaggaagaagaagagatgGAAGGCAGGGAAGGCAGGGTGTAAGCAAAGCCTCAACAGGACCTCTGTGaagtgagtgagtgtatgtgcatacagtatacaggtgtaccAGCATTATGCACATTGTGAACATTAGCCAAAACTAAATCCAAGCGAGCAAGTCTATCTATTTACTACCAATGTGCACGTTTTCAGTAGAGTGGAGCATAATGACTATATGTGTAATAATAACAGAGTGAATATTTTCGTGCAGTGCCTTTGTGCACTGACTAGCAATATTCTCCTGTCACTGTGTTGTTataatggtggtgatggtgtagGAATACTGAAGCTCCACCAGGGGGCTCTGTAGTGGCACTTCTCTCCTCTAGCTGCTGCTGCCCTCAATGAGTCTGGCCAGGCTGTCTCTGAGCTCTGTCAGCTCAAAGATCTTCCCGTCCAGCAGCTCCAGCAGGGTGCGCAGACTCTTCCTGAAggcctctctctccagctgacTGCCCTCCAGACGCTGCTCTAACTCCACCAGCTGAGCTTCCAACGTCTGgttcctctcctccgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2462539 lncRNA downstream 61682 13025563 ~ 13025771 (-) True G2153676
TU2462532 lncRNA downstream 67920 13018084 ~ 13019533 (-) True G2153672
TU2462530 lncRNA downstream 68175 13018084 ~ 13019278 (-) False G2153672
TU2462528 lncRNA downstream 70599 13016463 ~ 13016854 (-) True G2153670
TU2462512 lncRNA downstream 79338 12980338 ~ 13008115 (-) True G2153654
TU2462599 lncRNA upstream 15652 13107008 ~ 13117136 (-) True G2153729
TU2462620 lncRNA upstream 69933 13161289 ~ 13161590 (-) True G2153749
TU2462624 lncRNA upstream 81664 13173020 ~ 13173427 (-) True G2153753
TU2462636 lncRNA upstream 97242 13188598 ~ 13188834 (-) True G2153765
TU2462906 lncRNA upstream 107824 13199180 ~ 13199412 (-) True G2154017
trnag-ccc-7 mRNA downstream 85394 13001989 ~ 13002059 (-) True trnag-ccc-7
XM_036967416.1 mRNA downstream 85611 12982130 ~ 13001842 (-) False LOC110509659
XM_036967417.1 mRNA downstream 85611 12982130 ~ 13001842 (-) False LOC110509659
XM_036967419.1 mRNA downstream 85611 12983990 ~ 13001842 (-) True LOC110509659
XM_036967418.1 mRNA downstream 85612 12982130 ~ 13001841 (-) False LOC110509659
XM_021590679.2 mRNA upstream 298 13091654 ~ 13150475 (-) True LOC110509662
XR_005040448.1 mRNA upstream 74184 13165540 ~ 13171705 (-) False LOC110509664
XR_005040449.1 mRNA upstream 74184 13165540 ~ 13171705 (-) False LOC110509664
XM_021590680.2 mRNA upstream 75211 13166567 ~ 13171705 (-) True LOC110509664
XR_005040462.1 mRNA upstream 144303 13235659 ~ 13236134 (-) True LOC118945314
TU2462005 other downstream 437958 12649176 ~ 12649495 (-) True G2153174
TU2461170 other downstream 1143300 11941462 ~ 11944153 (-) False atg10
TU2461172 other downstream 1143300 11941462 ~ 11944153 (-) True atg10
TU2460859 other downstream 1364974 11722072 ~ 11722479 (-) True G2152107
TU2460707 other downstream 1562301 11456618 ~ 11525152 (-) True LOC110509625
TU2463277 other upstream 637477 13728833 ~ 13731096 (-) True G2154361
TU2463349 other upstream 689303 13780659 ~ 13782254 (-) True G2154418
TU2463583 other upstream 909169 14000525 ~ 14010167 (-) True G2154637
TU2463664 other upstream 936969 14028325 ~ 14029770 (-) True cdc26
TU2463690 other upstream 962898 14054254 ~ 14056879 (-) True si:ch211-202f5.3

Expression Profile