RNA id: TU2462434



Basic Information


Item Value
RNA id TU2462434
length 432
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G2153583
representative True

Chromosome Information


Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 13181087 ~ 13181518 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


aaaaacatctgctaaacacttgTATGTGACCACTAAAtaatgatttgatttgacttgacaTCCTTTATGTTATGCACTCAGTAgttccctcaggtcctctggccttttaactatcccaaagcctagaaCCGAGAGACAGCTTTGAGTTAccatgcccccagcctctggaatagcctgcctgTCACGTCTACTCCAACTCTCCGGTGCTCGACGTCGCTGGTTTACTAATCACTGACTCTGACAACTATCATTACGTGCCCCACCGCCTCATCAtgagacacacctggactccaaCACTtcactgattacctcccctatatctttCACTCCCTTGGTTTCATTCCCTAGGCAATATTGGTTATGTGTTTCATGTCCAGACGCAACTCTTGTTTTTGTACCGTTCCATGTTCATTGCATTATTAAACTCACCAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2462433 lncRNA upstream 10957 13169587 ~ 13170130 (+) True G2153582
TU2462431 lncRNA upstream 12989 13167486 ~ 13168098 (+) False G2153582
TU2462398 lncRNA upstream 13681 13166427 ~ 13167406 (+) True G2153550
TU2462391 lncRNA upstream 87199 13091689 ~ 13093888 (+) True G2153543
TU2462324 lncRNA upstream 89746 13089531 ~ 13091341 (+) True G2153478
TU2462638 lncRNA downstream 9554 13191072 ~ 13191363 (+) True G2153767
TU2462654 lncRNA downstream 47439 13228957 ~ 13230126 (+) True LOC110509665
TU2462796 lncRNA downstream 301620 13483138 ~ 13493716 (+) True LOC110509670
TU2462873 lncRNA downstream 414117 13595635 ~ 13596456 (+) True G2153986
TU2462897 lncRNA downstream 454285 13635803 ~ 13636156 (+) True G2154008
XM_021590677.2 mRNA upstream 92916 13018053 ~ 13088171 (+) False LOC110509661
XM_021590678.2 mRNA upstream 92916 13018054 ~ 13088171 (+) True LOC110509661
XR_002471458.2 mRNA upstream 735766 12438582 ~ 12445321 (+) True LOC110509656
XM_036967965.1 mRNA upstream 786519 12377064 ~ 12394568 (+) True atp6v1b2
XM_036967886.1 mRNA upstream 808740 12365542 ~ 12372347 (+) True dusp11
LOC110509665 mRNA downstream 44889 13226407 ~ 13230321 (+) False LOC110509665
XM_021590681.2 mRNA downstream 52953 13234471 ~ 13259942 (+) True arsb
XM_021590682.2 mRNA downstream 81148 13262666 ~ 13336582 (+) False LOC110509667
XM_021590684.2 mRNA downstream 81148 13262666 ~ 13336582 (+) True LOC110509667
XM_036967340.1 mRNA downstream 195784 13377302 ~ 13442767 (+) True LOC110509669
TU2462149 other upstream 420597 12759880 ~ 12760490 (+) True G2153316
TU2461440 other upstream 873649 12300792 ~ 12307438 (+) True G2152639
TU2460909 other upstream 1414736 11764224 ~ 11766351 (+) True G2152150
TU2460223 other upstream 1814595 11360385 ~ 11366492 (+) True G2151555
TU2459342 other upstream 2718867 10461753 ~ 10462220 (+) True G2150729
TU2463200 other downstream 486771 13668289 ~ 13669170 (+) True G2154294
TU2463318 other downstream 591190 13772708 ~ 13774088 (+) False G2154391
TU2463316 other downstream 592229 13773747 ~ 13776134 (+) True G2154391
TU2463371 other downstream 624495 13806013 ~ 13813970 (+) True G2154438
TU2463446 other downstream 751730 13933248 ~ 13935819 (+) True G2154512

Expression Profile