RNA id: TU2463277


Basic Information

Item Value
RNA id TU2463277
length 2206
RNA type TUCP
GC content 0.49
exon number 2
gene id G2154361
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 13728833 ~ 13731096 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTAATATTTCCAAAATTGTAGACCCTTTCCCAACAATAGTTTGACAATCTGATTAAAACACGGCTGACATTTCACTCTGCTCTCTAACTCTTCACCGACCCTCTGCTCCAATCATCATCAACAGTACAAATATTCTGCAGTTTCCCATATTAATAATCTATTAGAACACAAGCACACTCTCTAGGAATACCAAGTATACTTGATGCTCGGCCAATGACATGCTTGAAAAGAGAAATAGTTGTGTTTGGTTTTTGTTTGTGTTTAGGCCCCAGGCTGAAGATCATGGATCACAATGAAGGTGTTTTGTCGTGGGAGGGTCAGTGTAGAGGTCTCTGCCAAAGAGATTATAGACAGTGTCTGAAAGAGAGGATGATAAATTAGTATTGGCCCCACGCATCGCTCTGGCGGCCCACTGGACACCGCTAAAAGACTGCCATTCAGCTttctggtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcgcgcgcggaTTTCCCTTGTGTTACCCTGCTTGAATTGCTGTGCTGCAATCCTTCAACTGTGTTATTttcaacaaaacacacattttccAAAAATACTACATGAGTTATTAAAATACCTATAAAACATCTGTGCAGTCTTATGTTTACATGTCTCTCATCTACCAACAGTTATACTACATCAGGTTATCCAGTCATAGGATTTACCCCCAAAGAAATTATTCAAAAAGAGTTCAAAACAGAGAAACATAGGAAAATGTCAATAGCAAAAAAACGTAGCAAAAATGTACAACTCCAGTCAGCATGGATTATTAGCGGTATtagtaaaacacacacatttcaaatGCAGGGAAGTCTGACCTGAGAATGCCATGGAAACCAATGAAAAAAACCCACAGAGCAACCCCAAACAAATCAATATCGTACAAAACCAGAGATCTGACAGAGAGCTACAGAGCGCAGTTAGTGTAAAGTCATTACATTTCATGAACACAAAGAAAGATGGAAAAggtgaagagcgagagagagagagagagagagagagagagagagagaggtgtggacagagagaaagacagaagagatagagtaaggaagggagagagattggatgaaatacacacaaaaagcggtcaagggagagggaggagagagaaaaaaagcaaCACTCAAGCTCCTTTATCCTTCCTCCCTTTCAGACCTTCCTCAACATATCTATCTTTGGAGGGGGTGGGCACCATGTTAGTCCCCCCCAGCCAGTCCCAGTGGGAGAAGAACGGGGCAAAGTTTGTCCCGGGCATCCGGTGGTGAGCGTCGTGTTTGGGGGGTCCGCCCCACAGGCCGAAGGGCACCAGGCGGTGCAGCGACCAGGGGAAGTCGTAGCCACAGTGGTCCTCAGTGGACACACAGATGGTGAACACCATGAAGCCCCAAGCGGTCAGGCAGTGGCACTGCAGCAGGAGGGGGTCCACAGTGGTCCAGAAGCCCGAGCTGATCAGCTCCCAGGCGGACACGTACTGGGTAACCAGGCTAAAGGGCTGAAGGTACTGGTGGTGCATGGCGTGGAAGGTGCGGTACAGCCATGGGACTCTGTGGTGTAGAAGATGCCAAAGATAGAACTGGAAGTCAAAGACCACCATGCACCCCAGGATGCCCAGGAGGAAGCTCATTAGAGTGGGTGCGTCACGGGGGAGCGGGATAGGAGGCCTCCACAGCCACTGGCCCACAGCAGCAGGGAAGATATAGACCAGGTGGTTGTAGGCTGTGAGATACAGGGTGGTCCAGATGTTGTCCCAGGTGACGGGTCTGTCTGGGTGGAGCTTGTAGCTGTTGAGGGCTGGCCAGCTGGGGGCCAGGAGGTCTAGCAGGGTGTAGAGGGTCACCAGGAGAAggtaggtagagacagagatgaccaCAGGGAACAAAGGGCTCCGCAGCTCAGCCTGGTGGTGCTGCAGGAGGTAGTCCCACGCCGGCTGAAGGACGGACTGCTCCGGGAGCCCCAGACCCAGGGTCAGGTTAGCCACGGTCAGGTGAGACATCCAGGGGAGAGACACACCGCTGAACAAACCGCCTGCACTCACTGTGTCCCAACTAAAGTCTAATAGTCTCAGAGGATTCATTTATTATCTGGGTTGGTTGCAACAGACTCCACAAGAATGGCAAAGATACTTCCAGCTGTAATGTTTGTTTTTCTGCAAAAGGCAAATAATCTGGTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2463194 lncRNA downstream 64816 13663724 ~ 13664017 (-) True G2154288
TU2463078 lncRNA downstream 175193 13489024 ~ 13553640 (-) True G2154177
TU2462923 lncRNA downstream 470026 13245159 ~ 13258807 (-) True G2154028
TU2462926 lncRNA downstream 491102 13235313 ~ 13237731 (-) True G2154030
TU2462914 lncRNA downstream 498497 13228570 ~ 13230336 (-) False G2154024
TU2463289 lncRNA upstream 8946 13740042 ~ 13740337 (-) True G2154373
TU2463340 lncRNA upstream 29495 13760591 ~ 13760919 (-) True G2154409
TU2463335 lncRNA upstream 42646 13773742 ~ 13774229 (-) True G2154404
TU2463350 lncRNA upstream 52237 13783333 ~ 13783782 (-) True G2154419
TU2463619 lncRNA upstream 220489 13951585 ~ 13952412 (-) True G2154671
XM_036967239.1 mRNA downstream 1496 13722252 ~ 13727337 (-) True LOC118945261
XM_021590695.2 mRNA downstream 85114 13633977 ~ 13643719 (-) True LOC110509672
XM_021590693.2 mRNA downstream 85141 13633977 ~ 13643692 (-) False LOC110509672
XM_021590694.2 mRNA downstream 85141 13633977 ~ 13643692 (-) False LOC110509672
XM_036967466.1 mRNA downstream 94994 13539738 ~ 13633839 (-) True LOC110509326
XM_021590697.2 mRNA upstream 11441 13742537 ~ 13745324 (-) True f2rl1.2
XM_021590698.2 mRNA upstream 16639 13747735 ~ 13751826 (-) False LOC110509675
XM_021590699.2 mRNA upstream 16639 13747735 ~ 13752187 (-) True LOC110509675
XM_021590700.2 mRNA upstream 22679 13753775 ~ 13757521 (-) True LOC110509677
XM_036968061.1 mRNA upstream 76311 13807407 ~ 13854315 (-) False LOC110509327
TU2462547 other downstream 637477 13087453 ~ 13091356 (-) True G2153683
TU2462005 other downstream 1079338 12649176 ~ 12649495 (-) True G2153174
TU2461170 other downstream 1784680 11941462 ~ 11944153 (-) False atg10
TU2461172 other downstream 1784680 11941462 ~ 11944153 (-) True atg10
TU2460859 other downstream 2006354 11722072 ~ 11722479 (-) True G2152107
TU2463349 other upstream 49563 13780659 ~ 13782254 (-) True G2154418
TU2463583 other upstream 269429 14000525 ~ 14010167 (-) True G2154637
TU2463664 other upstream 297229 14028325 ~ 14029770 (-) True cdc26
TU2463690 other upstream 323158 14054254 ~ 14056879 (-) True si:ch211-202f5.3
TU2464046 other upstream 492025 14223121 ~ 14223931 (-) True G2155063

Expression Profile