RNA id: TU2463371


Basic Information

Item Value
RNA id TU2463371
length 2658
RNA type TUCP
GC content 0.42
exon number 3
gene id G2154438
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 13806013 ~ 13813970 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtttgaagcctgaaatgtggcaaaaggtcgcaaagttcaagggggccgaatactttcgcaaggcactgtagctagctggctaacattagctaggctaggagttagggttgggtgttagggttaagtttaggggttaggttaaagggttaaggtatcaggaatcaaggtaagacccagatgcataCTGTCGAAGTAACACTGTTTATTGTAGTAACTGGGCAGGCAAGACAGGTCAAGATAGGCAGGGGTCGAAAATCCAGGgtaaggcaaaggtacaggacggcaggcggactcagggtcagggacaggcagggttcagtaatccagaggtggagcaaaggtacaggacggcagacaggctcagggtcaggcagagaggtcaggacggTGGGTACAGGTTCAGgacaggcaatggtcaaaaccgggaggactagcatgGTCGTTATTAGATATTACTGACTGGACGGAACTAGAagctcaagcatttcgctacactcgcattaccatctgctaaccatgtgtatgtgaccaataacatgtgatttgatttgattttagcaaCGAGAGGCTGGGAAACGATAGGAGCTGACAGGAAAAAACGCTGGTATACTTGAACGAACAAGACGAACTGGTAACAatcagacagagaacacaggtataaaaacACAGGGGATAATAGGGAAGATTGGCGACACCTGGAAGGttgtggagacaagcacaaggacaggtgaaacagaacagaacagaatagaaacaGGGCGTGacttaaggttaggattaggggaagggttagctaacatgcaaaATAATTACAAAGTAGCTCAAAAAAAttgtagttgaaaagttgctaattagctaaagttgtccgtaatgagattcaaactcgcaacctttgAGTTTCTAGACGTTTGTGTTATATGCCAACCCATCCACCCCGATGAACCACcctactttagtttttgccttaaaacttattatggctgcaggggcagtattgagtagcttggatgaaatatatgtatatataatatatgcatattattattggtattggatagaaaacaccctgaagtttctaaaactgtttgaatgatgtctgtgagtacaacagaactcatatggcaggcaaaaacctgagaagaaatccaaacaaggaagtggaaaatctgaggttggccgattttcaacccagcccctattgaatacacagtggggtatggataaagttgcacttcctagggcttccactagatgtcaaacgtctttagaaacttgaatgaggcttctactgtgttgtggatgggagctctttgagtcagtggtctggcagagagccaggtcctggtcatgcgcatttcacatgatagcgacctgcgttccatggcttctctacagacataggaattctctggttggaactttattgaagatttatgataacaacatcctagagattgattctatacttagtttgacaagtttcttcgacctgcaATATacctttttgaagttttcgtccaaCGTTCGGATGGACCTGCACAAGCGTTTGGATTTTCgtactaaacgcgctaacaaaagtagctccttgaacataaataatggacattatcgaacaaatcaagcatttattgtgcaactaggattcctgggagtgcattctgatgaagatcgtcaaaggtaagggaatatttataatgtgaatTCTGATTTCTGTTTACTTTATTTtctaatcgtttgtggtgcttcgCTGTAAATcttatttgaaatcggacactgtggtgggattaacaacaagattaacttaattaaaacggtataaaatggaattttaattatgagatttctgttgctttgaatttggcgccctgcactttcaccggctgttgtcatatcgatcccgttaacgggattgcagccctaagaagtaaGTAACCATCGGTCTTATGTAACCCTACCAAACGTGACATATCATATCAAAtcaacatatcatactaatttgagtgtcccagatttacatttaccATGTTaggtctagtctatgagaccaggctgctacAATGGCTTTTTCATATATCATCCCGTTAAAATCCACCTGCTTTCTGCTTAAACACATAGTTTTAGTTTAATGTTATATCAACTCAGCAACAAATAACCTAAACACGCATAAGCAGATATTACTTTTCTGTTTATGGATTTAAATTAGGTTACACACCAAGATGGTGAAACTGACAAGCTAGCTCACAGGTGATTGCCTATATATCACACACacccgcagacacacacacacacacacacacacacacacacattagagcGAAAAAGAGAAGAACTACATACTAGAGCGAGTTTCATAAGAGAGAAAGGTTGGAGGGAACGAGGCACGACATTTGAGAAAGGCCATCGAGTTTTGTAGAGGGTAAGCTACCATATGAGACAGGCagcatggcagagagagagaaggatagagggttggagagagaatcacaacagaaagaaacagagagagcaaggtaaggagagagagagagacaatgcgAGAAAGATaaatggaaagacagagagagagagagagagagagggagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2463325 lncRNA upstream 19298 13786515 ~ 13786715 (+) True G2154396
TU2463323 lncRNA upstream 25437 13779562 ~ 13780576 (+) True LOC110509678
TU2463308 lncRNA upstream 39444 13766276 ~ 13766569 (+) True G2154384
TU2463303 lncRNA upstream 53339 13752324 ~ 13752674 (+) True G2154379
TU2463252 lncRNA upstream 94313 13711493 ~ 13711700 (+) True G2154340
TU2463448 lncRNA downstream 101700 13915670 ~ 13935819 (+) False G2154512
TU2463447 lncRNA downstream 104169 13918139 ~ 13935819 (+) False G2154512
TU2463469 lncRNA downstream 132499 13946469 ~ 13981651 (+) True G2154533
TU2463505 lncRNA downstream 198911 14012881 ~ 14013081 (+) True G2154564
TU2463506 lncRNA downstream 199246 14013216 ~ 14013423 (+) True G2154565
XM_021590701.2 mRNA upstream 23308 13779399 ~ 13782705 (+) False LOC110509678
XR_005040354.1 mRNA upstream 58554 13745413 ~ 13747459 (+) True LOC110509676
XM_021590696.2 mRNA upstream 74902 13728812 ~ 13731111 (+) True LOC110509673
NM_001124631.1 mRNA upstream 108527 13678513 ~ 13697486 (+) True crf-bp
XM_021590689.2 mRNA upstream 301984 13498480 ~ 13504029 (+) False LOC110509671
XM_036968286.1 mRNA downstream 126217 13940187 ~ 13942428 (+) True LOC110509328
XM_036967425.1 mRNA downstream 144663 13958633 ~ 13996453 (+) False LOC110509680
XM_036967427.1 mRNA downstream 144664 13958634 ~ 13996453 (+) True LOC110509680
XM_021590705.2 mRNA downstream 186284 14000254 ~ 14010168 (+) True atp6v1g1
XM_021590708.2 mRNA downstream 201072 14015042 ~ 14028322 (+) False slc31a1
TU2463316 other upstream 29879 13773747 ~ 13776134 (+) True G2154391
TU2463318 other upstream 31925 13772708 ~ 13774088 (+) False G2154391
TU2463200 other upstream 136843 13668289 ~ 13669170 (+) True G2154294
TU2462149 other upstream 1045523 12759880 ~ 12760490 (+) True G2153316
TU2461440 other upstream 1498575 12300792 ~ 12307438 (+) True G2152639
TU2463446 other downstream 119278 13933248 ~ 13935819 (+) True G2154512
TU2464720 other downstream 1204657 15018627 ~ 15093949 (+) True G2155696
TU2466780 other downstream 2536747 16350717 ~ 16353665 (+) True G2157602
TU2467775 other downstream 3375374 17189344 ~ 17191098 (+) False G2158499
TU2467776 other downstream 3375533 17189503 ~ 17191128 (+) True G2158499

Expression Profile