RNA id: TU2463447


Basic Information

Item Value
RNA id TU2463447
length 1833
lncRNA type antisense_over
GC content 0.50
exon number 3
gene id G2154512
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 13915670 ~ 13935819 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctctctttctttctctctctcggaggatctgagccctaggaccatgcctcaggactacctgacatgatgactccttgctgtccccagtccacctggccgtgctgtggctccagtttcaactgttctgccttattattatttgaccatgttggtcatctatgaacatttgaacatcttggccatgttctgttataatctccacacagccagaagaggactggccacaccacatagcctggttcctctctaggttttttcctaggttttggtctttctagggagtttttcctagccaccgtgcttctacacctgcattgcttgctgtttacggttttaggctgggtttctatacagcactttgagatatcatctgatgtacgaagggctatataaatacatttgatttgatttgaggacaACATAGTCCTCATTAGCTTGATACGTATTTCCAGTCTTCCGCCACATGGTCCAATATCCATCCTTAGGACTCGTTGTTAGGTATCCCTTCCTGTTTGTGGACTCTCTGACCACTCCTAAATCCCAGTTAAGCCCATTCACCTGCAACTCATAGTAGAATCTCCCAGAGGAGAAGTCCTTATTTCCCAGGACACAGGCAGCTGGGTCAAACCTCTTTGTCAGGGAGACTACAACACGGGTTTCCCGGTATCACTTGTTTCTTGTTCTTAGACCGTGTGAGACAGAAGTGAGCAGTATCAGGGTCCAGAGTCACATCCACAGCATACTGCTGTATCCTCTTCAGCTCAGCATCACACAACTTCTTCACTTCACTCCACTCCACAGTGTCTCCTCCAGCAGAGACGCAGCTCTCTGCAGGTGCCCCACACCCAGACTGCTGTGAACCCTGATCTCAGACCAGTCCTTGACGGGAGAAAGACTGCAGAGGGATGGGGAGCTCTGGAGGAGgtggaggtggtcctCAGTGTGTGACAGCTGCTCCAGCTCAGTGTgtctcctctgtagctcagtgatTTCCTGATCCAGCTCTTTAATGAGGCCTTCAGCCTGCCTCTCTGCTGCTTTCAGCTTGTCCTCGACCACCTCAATGAAATCAACCTGGCTTCTCTCAATGGAACGCACCAGGGCAGTGAAGACCTGCACGCTGCCTGCTATCTcgctctctgcgtctctcttgCAGAGCGCTATTGAGTATTTGATGTCCTTAACCTTCTGCAGTTGCTTCTGGATCATCTGCTGCACTTCTACCTCCATCTTCCCCAGCTGGGCTTTCTTCTTTCCATACTCTTCCTTTAGAGGGACGGTGTAGTGAGTCTTGTGGTCTGTTTTTATACACAAGACACAAACACACGTCTGGTCAGTCCTACAGAACATCTCCAGGAGTTTGTCATGCTCCTTACACACCCTGTCTTCCAGGTTCTCCACAGGGTCGAtcagcttgtgtttcttcagggCTGGGGCGATCTGATGAGCCTCCaggtgagtctcacagtaagaggcCAGACACACCAGGCAAGACTTCAGGGCCTTGTGCTTCGTCCCAGTGCAGACGTCACAGGCCACTCCTCTAAGCTCAGTAGGGCAATGGTCTGGGCCGCTGGTAGCTTTCACTTGAACAGACTTCCTGAACTGAGCAGCCATCTCAGAAATGAAAGTATTGACAAAGAGATCTGGTCTCCTATCAAATGATTTTTTACACATTGGACACTGGCACAGGTCAGTGGTATCCCAGTACTTTCTGATACAGGCCTTGCAGAAGTTGTGTCCACATGGAATGGCTACAGGATCAGTGAACACATCCAGACAGATAGAGCACAGGAACTGCTCTTCGGACAGGAGACTGCTGGAGGATGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2463325 lncRNA upstream 131424 13786515 ~ 13786715 (+) True G2154396
TU2463323 lncRNA upstream 137563 13779562 ~ 13780576 (+) True LOC110509678
TU2463308 lncRNA upstream 151570 13766276 ~ 13766569 (+) True G2154384
TU2463303 lncRNA upstream 165465 13752324 ~ 13752674 (+) True G2154379
TU2463252 lncRNA upstream 206439 13711493 ~ 13711700 (+) True G2154340
TU2463469 lncRNA downstream 10650 13946469 ~ 13981651 (+) True G2154533
TU2463505 lncRNA downstream 77062 14012881 ~ 14013081 (+) True G2154564
TU2463506 lncRNA downstream 77397 14013216 ~ 14013423 (+) True G2154565
TU2463514 lncRNA downstream 108351 14044170 ~ 14044421 (+) True G2154573
TU2463515 lncRNA downstream 108634 14044453 ~ 14044814 (+) True G2154574
XM_021590701.2 mRNA upstream 135434 13779399 ~ 13782705 (+) False LOC110509678
XR_005040354.1 mRNA upstream 170680 13745413 ~ 13747459 (+) True LOC110509676
XM_021590696.2 mRNA upstream 187028 13728812 ~ 13731111 (+) True LOC110509673
NM_001124631.1 mRNA upstream 220653 13678513 ~ 13697486 (+) True crf-bp
XM_021590692.2 mRNA upstream 414110 13498749 ~ 13504029 (+) True LOC110509671
XM_036968286.1 mRNA downstream 4368 13940187 ~ 13942428 (+) True LOC110509328
XM_036967425.1 mRNA downstream 22814 13958633 ~ 13996453 (+) False LOC110509680
XM_036967427.1 mRNA downstream 22815 13958634 ~ 13996453 (+) True LOC110509680
XM_021590705.2 mRNA downstream 64435 14000254 ~ 14010168 (+) True atp6v1g1
XM_021590708.2 mRNA downstream 79223 14015042 ~ 14028322 (+) False slc31a1
TU2463371 other upstream 104169 13806013 ~ 13813970 (+) True G2154438
TU2463316 other upstream 142005 13773747 ~ 13776134 (+) True G2154391
TU2463318 other upstream 144051 13772708 ~ 13774088 (+) False G2154391
TU2463200 other upstream 248969 13668289 ~ 13669170 (+) True G2154294
TU2462149 other upstream 1157649 12759880 ~ 12760490 (+) True G2153316
TU2464720 other downstream 1082808 15018627 ~ 15093949 (+) True G2155696
TU2466780 other downstream 2414898 16350717 ~ 16353665 (+) True G2157602
TU2467775 other downstream 3253525 17189344 ~ 17191098 (+) False G2158499
TU2467776 other downstream 3253684 17189503 ~ 17191128 (+) True G2158499
TU2470138 other downstream 5124724 19060543 ~ 19065772 (+) False LOC110509751

Expression Profile