RNA id: TU2463861



Basic Information


Item Value
RNA id TU2463861
length 300
lncRNA type intronic
GC content 0.42
exon number 2
gene id G2154893
representative True

Chromosome Information


Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 14316289 ~ 14316615 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


attttttcccattcctccttgcaaaacagctcgagctcagtgaggttggatggttctttccacagattctcgattggattcaggtctggactttgacttggccattctaacacctggatatgtttatttttgaaccattccattgtagattttgctttatgttttggatcattgtcttgttggaagacaaatctccgtcccagtctgaggtcttttgcagactccatcaggttttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2463791 lncRNA upstream 79583 14236418 ~ 14236706 (+) True G2154834
TU2463789 lncRNA upstream 80938 14235072 ~ 14235351 (+) True G2154832
TU2463787 lncRNA upstream 82376 14233566 ~ 14233913 (+) True G2154830
TU2463749 lncRNA upstream 85049 14231018 ~ 14231240 (+) True LOC110509690
TU2463780 lncRNA upstream 114906 14200883 ~ 14201383 (+) True G2154823
TU2463920 lncRNA downstream 110328 14426943 ~ 14427162 (+) True G2154952
TU2464368 lncRNA downstream 253021 14569636 ~ 14569859 (+) True G2155370
TU2464387 lncRNA downstream 265432 14582047 ~ 14582529 (+) True G2155388
TU2464388 lncRNA downstream 266431 14583046 ~ 14583441 (+) True G2155389
TU2464398 lncRNA downstream 271423 14588038 ~ 14588249 (+) True G2155398
XM_021590725.2 mRNA upstream 85052 14215122 ~ 14231237 (+) False LOC110509690
XM_021590726.2 mRNA upstream 85052 14215408 ~ 14231237 (+) False LOC110509690
XM_036967477.1 mRNA upstream 85052 14216463 ~ 14231237 (+) False LOC110509690
XM_021590723.2 mRNA upstream 140293 14171799 ~ 14175996 (+) True LOC110509688
XR_005040826.1 mRNA upstream 275722 14040434 ~ 14040567 (+) True LOC118945711
XM_036967371.1 mRNA downstream 20407 14337022 ~ 14396808 (+) True LOC110509691
XM_021590738.2 mRNA downstream 469372 14785987 ~ 14806264 (+) True LOC110509696
XR_002471471.2 mRNA downstream 559102 14875717 ~ 14879923 (+) False LOC110509698
XR_005040399.1 mRNA downstream 559102 14875717 ~ 14879923 (+) True LOC110509698
XM_036967986.1 mRNA downstream 639725 14956340 ~ 14969875 (+) False LOC110509699
TU2463446 other upstream 380470 13933248 ~ 13935819 (+) True G2154512
TU2463371 other upstream 502319 13806013 ~ 13813970 (+) True G2154438
TU2463316 other upstream 540155 13773747 ~ 13776134 (+) True G2154391
TU2463318 other upstream 542201 13772708 ~ 13774088 (+) False G2154391
TU2463200 other upstream 647119 13668289 ~ 13669170 (+) True G2154294
TU2464720 other downstream 702012 15018627 ~ 15093949 (+) True G2155696
TU2466780 other downstream 2034102 16350717 ~ 16353665 (+) True G2157602
TU2467775 other downstream 2872729 17189344 ~ 17191098 (+) False G2158499
TU2467776 other downstream 2872888 17189503 ~ 17191128 (+) True G2158499
TU2470138 other downstream 4743928 19060543 ~ 19065772 (+) False LOC110509751

Expression Profile