RNA id: TU2463920


Basic Information

Item Value
RNA id TU2463920
length 220
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G2154952
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 14426943 ~ 14427162 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caaaccccaaccagaaaccatagATTACAGGACGCATCCGCACTgagttaaaggctagagctgccgctttcaaggagcgggactctaacccggaagcttataaaaaatcccgctatgccctccgacaaaccctcaaacaggcaaagcgtcaatacaggactaagatcgagtcgtactacaccggctctgacgctcgtcggatgtgatagggcctgcaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2463861 lncRNA upstream 110328 14316289 ~ 14316615 (+) True G2154893
TU2463791 lncRNA upstream 190237 14236418 ~ 14236706 (+) True G2154834
TU2463789 lncRNA upstream 191592 14235072 ~ 14235351 (+) True G2154832
TU2463787 lncRNA upstream 193030 14233566 ~ 14233913 (+) True G2154830
TU2463749 lncRNA upstream 195703 14231018 ~ 14231240 (+) True LOC110509690
TU2464368 lncRNA downstream 142474 14569636 ~ 14569859 (+) True G2155370
TU2464387 lncRNA downstream 154885 14582047 ~ 14582529 (+) True G2155388
TU2464388 lncRNA downstream 155884 14583046 ~ 14583441 (+) True G2155389
TU2464398 lncRNA downstream 160876 14588038 ~ 14588249 (+) True G2155398
TU2464403 lncRNA downstream 172002 14599164 ~ 14599383 (+) True G2155401
XM_036967369.1 mRNA upstream 30135 14289212 ~ 14396808 (+) False LOC110509691
XM_036967370.1 mRNA upstream 30135 14289212 ~ 14396808 (+) False LOC110509691
XM_036967371.1 mRNA upstream 30135 14337022 ~ 14396808 (+) True LOC110509691
XM_021590725.2 mRNA upstream 195706 14215122 ~ 14231237 (+) False LOC110509690
XM_021590726.2 mRNA upstream 195706 14215408 ~ 14231237 (+) False LOC110509690
XM_021590738.2 mRNA downstream 358825 14785987 ~ 14806264 (+) True LOC110509696
XR_002471471.2 mRNA downstream 448555 14875717 ~ 14879923 (+) False LOC110509698
XR_005040399.1 mRNA downstream 448555 14875717 ~ 14879923 (+) True LOC110509698
XM_036967986.1 mRNA downstream 529178 14956340 ~ 14969875 (+) False LOC110509699
XM_021590740.2 mRNA downstream 529178 14956340 ~ 14970212 (+) True LOC110509699
TU2463446 other upstream 491124 13933248 ~ 13935819 (+) True G2154512
TU2463371 other upstream 612973 13806013 ~ 13813970 (+) True G2154438
TU2463316 other upstream 650809 13773747 ~ 13776134 (+) True G2154391
TU2463318 other upstream 652855 13772708 ~ 13774088 (+) False G2154391
TU2463200 other upstream 757773 13668289 ~ 13669170 (+) True G2154294
TU2464720 other downstream 591465 15018627 ~ 15093949 (+) True G2155696
TU2466780 other downstream 1923555 16350717 ~ 16353665 (+) True G2157602
TU2467775 other downstream 2762182 17189344 ~ 17191098 (+) False G2158499
TU2467776 other downstream 2762341 17189503 ~ 17191128 (+) True G2158499
TU2470138 other downstream 4633381 19060543 ~ 19065772 (+) False LOC110509751

Expression Profile